CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
plastid 2
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX98018
CDY16053
CDY19377
CDY26609

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06050.1	CDX98018	AT1G13030.1	21798944
AT2G06050.1	CDY16053	AT1G13030.1	21798944
AT2G06050.1	CDY19377	AT1G13030.1	21798944
AT2G06050.1	CDY26609	AT1G13030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93099	Canola	peroxisome	98.46	98.46
Bra013161.1-P	Field mustard	peroxisome	97.94	97.94
AT2G06050.1	Thale cress	cytosol, plastid	90.23	89.77
KRH19303	Soybean	nucleus	74.29	72.61
Solyc07g007870.2.1	Tomato	plastid	73.52	72.22
VIT_11s0016g01230.t01	Wine grape	plastid	73.78	72.11
KRH02619	Soybean	nucleus	73.52	71.86
Os08t0459600-01	Rice	cytosol	71.72	70.81
PGSC0003DMT400079356	Potato	plastid	72.49	70.5
KRH02618	Soybean	mitochondrion	67.35	68.77
TraesCS7D01G405500.1	Wheat	golgi	68.89	68.72
TraesCS7A01G412400.1	Wheat	mitochondrion, peroxisome	68.89	68.72
TraesCS7B01G311600.1	Wheat	mitochondrion, peroxisome	68.64	68.46
Zm00001d032049_P002	Maize	extracellular, mitochondrion	70.18	68.42
Zm00001d050107_P001	Maize	extracellular, mitochondrion	69.67	67.92
KRH19304	Soybean	mitochondrion, plastid	67.61	67.78
EES13971	Sorghum	peroxisome, plastid	69.41	67.16
GSMUA_Achr7P02310_001	Banana	mitochondrion	56.81	64.43
TraesCS5B01G487600.1	Wheat	mitochondrion	61.7	62.99
HORVU7Hr1G095960.1	Barley	plastid	68.89	55.37
CDY21723	Canola	cytosol, mitochondrion, peroxisome	49.36	52.89
CDY32174	Canola	cytosol, peroxisome, plastid	11.05	52.44
CDX81857	Canola	cytosol	49.36	51.75
CDY32175	Canola	plastid	33.68	51.57
CDX69416	Canola	mitochondrion, plastid	49.36	51.34
CDY20395	Canola	cytosol, mitochondrion, peroxisome	48.59	50.81
CDY45941	Canola	plastid	48.33	50.54
CDY16975	Canola	mitochondrion, plastid	47.81	49.87
CDY31095	Canola	plastid	47.3	49.07
CDY47292	Canola	mitochondrion, plastid	24.16	30.72
CDY28613	Canola	golgi, plastid, vacuole	19.28	19.43

Protein Annotations

MapMan:11.7.1.6	Gene3D:3.20.20.70	GO:A0A078IHH8	UniProt:A0A078IHH8	InterPro:Aldolase_TIM	EnsemblPlants:CDY50415
ProteinID:CDY50415	ProteinID:CDY50415.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00096654001
InterPro:IPR013785	InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF67	SUPFAM:SSF51395
UniParc:UPI0004EBD348	:	:	:	:	:

Description

BnaC03g45030DBnaC03g45030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHH8]

Coordinates

chrLK032907:-:69091..75104

Molecular Weight (calculated)

42567.6 Da

IEP (calculated)

8.541

GRAVY (calculated)

-0.301

Length

389 amino acids

Sequence
(BLAST)

001: MAAQGNSTDT LFSPYKMGRF DLSHRVVLAP MTRCRALNGV PNAALAEYYA QRTTPGGFLI SEGTMISPGS AGFPHVPGIY SEEQVEAWKH VVEAVHSKGG
101: LIFCQLWHVG RASHPLYQPN GGSPISSTDK PISERWRVLL PDGSHAKYPK PRPLHASEIP RVVEDYCNSA VNAIRAGFDG IEIHGAHGYL IDQFMKNGIN
201: DRTDQYGGSI ENRCRFLLQV VKGVVSAIGA SKVGVRISPA IDHLDATDSD PLSLGLAVVD LLNKLQDDTG SKLAYLHVTQ PRYHAYGQTE SGRQGSDEEE
301: AKLMKSLRTA YNGTFMSSGG FNKELGMQAI RQGDADLVSF GRLFIANPDL VSRFKVGAKL NKYNRKTFYT QDPVVGYTDY SFLAPVSRL

Best Arabidopsis Sequence Match ( AT2G06050.3 )
(BLAST)

001: MTAAQGNSNE TLFSSYKMGR FDLSHRVVLA PMTRCRALNG VPNAALAEYY AQRTTPGGFL ISEGTMVSPG SAGFPHVPGI YSDEQVEAWK QVVEAVHAKG
101: GFIFCQLWHV GRASHAVYQP NGGSPISSTN KPISENRWRV LLPDGSHVKY PKPRALEASE IPRVVEDYCL SALNAIRAGF DGIEIHGAHG YLIDQFLKDG
201: INDRTDQYGG SIANRCRFLK QVVEGVVSAI GASKVGVRVS PAIDHLDATD SDPLSLGLAV VGMLNKLQGV NGSKLAYLHV TQPRYHAYGQ TESGRQGSDE
301: EEAKLMKSLR MAYNGTFMSS GGFNKELGMQ AVQQGDADLV SYGRLFIANP DLVSRFKIDG ELNKYNRKTF YTQDPVVGYT DYPFLAPFSR L

Arabidopsis Description

OPR312-oxophytodienoate reductase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUP0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.