CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45941	Canola	plastid	98.66	98.66
CDX69416	Canola	mitochondrion, plastid	92.47	91.98
CDY16975	Canola	mitochondrion, plastid	91.67	91.42
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	86.56	86.1
AT1G76680.2	Thale cress	peroxisome	91.4	85.64
Solyc11g032130.1.1	Tomato	mitochondrion	73.12	76.84
CDY32174	Canola	cytosol, peroxisome, plastid	16.94	76.83
PGSC0003DMT400048327	Potato	cytosol	36.83	76.54
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	77.42	75.99
VIT_18s0041g02270.t01	Wine grape	vacuole	33.87	75.45
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	76.08	74.67
PGSC0003DMT400048331	Potato	mitochondrion	69.35	73.93
PGSC0003DMT400048344	Potato	cytosol	74.19	73.8
VIT_18s0041g02070.t01	Wine grape	mitochondrion	73.12	73.12
CDY21723	Canola	cytosol, mitochondrion, peroxisome	71.24	73.0
VIT_18s0041g02050.t01	Wine grape	mitochondrion	68.28	72.99
Solyc10g086220.1.1	Tomato	extracellular	73.66	72.87
VIT_18s0041g02020.t01	Wine grape	cytosol	73.92	72.56
VIT_18s0041g02010.t01	Wine grape	cytosol	72.31	72.51
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	34.68	72.07
PGSC0003DMT400048325	Potato	cytosol	25.0	71.54
CDX81857	Canola	cytosol	70.7	70.89
CDY31095	Canola	plastid	70.7	70.13
CDY32175	Canola	plastid	47.85	70.08
Solyc11g032230.1.1	Tomato	cytosol	61.56	70.03
GSMUA_Achr6P17440_001	Banana	cytosol	59.41	68.85
PGSC0003DMT400048328	Potato	cytosol	33.87	68.48
VIT_18s0041g02040.t01	Wine grape	cytosol	61.02	66.76
Solyc11g032220.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	50.54	63.09
CDY47292	Canola	mitochondrion, plastid	51.08	62.09
PGSC0003DMT400080542	Potato	extracellular	17.74	58.41
CDX93099	Canola	peroxisome	51.08	48.84
CDY50415	Canola	peroxisome	50.81	48.59
PGSC0003DMT400072012	Potato	cytosol	18.28	46.26
CDY28613	Canola	golgi, plastid, vacuole	26.88	25.91

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.3	GO:A0A078G1G3	UniProt:A0A078G1G3	InterPro:Aldolase_TIM	EnsemblPlants:CDY20395
ProteinID:CDY20395	ProteinID:CDY20395.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00012422001
InterPro:IPR013785	InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88	SUPFAM:SSF51395
UniParc:UPI0004EE4C46	:	:	:	:	:

Description

BnaC02g24210DBnaC02g24210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1G3]

Coordinates

chrLK032107:-:311218..313105

Molecular Weight (calculated)

41407.1 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.355

Length

372 amino acids

Sequence
(BLAST)

001: MENAVAKESI PLLTPYKMGR FNLSHRVVLA PLTRQRSYGN VPQPHAVLYY SQRTSPGGFL ITEATGVSDT AQGYQDTPGI WTKEHVEAWK PIVDAVHAKG
101: GVFFCQIWHV GRVSNRGFQP NGQAPISCSD KPLMPQIRSN GIDEALFTPP RRLSTEEIPG IVNDFRLAAR NAMEAGFDGV EIHGANGYLI DQFMKDTVND
201: RTDEYGGSLQ NRCKFALDIV EAVANEIGPD RVGIRLSPFA DYMESADTNP QALALHMAQS LNKYGILYCH VIEARMKTMG EITECPHLLV PMRKAFQGTF
301: ISAGGFKRED GNEAVEEGRT DLVAYGRWFL ANPDLPKRFE VDAELNKYDR PTFYTSDPVV GYTDYPFLES TA

Best Arabidopsis Sequence Match ( AT1G76680.1 )
(BLAST)

001: MENGEAKQSV PLLTPYKMGR FNLSHRVVLA PLTRQRSYGN VPQPHAAIYY SQRTTPGGFL ITEATGVSDT AQGYQDTPGI WTKEHVEAWK PIVDAVHAKG
101: GIFFCQIWHV GRVSNSGFQP NGKAPISCSD KPLMPQIRSN GIDEALFTPP RRLGIEEIPG IVNDFRLAAR NAMEAGFDGV EIHGANGYLI DQFMKDTVND
201: RTDEYGGSLQ NRCKFPLEIV DAVAKEIGPD RVGIRLSPFA DYMESGDTNP GALGLYMAES LNKYGILYCH VIEARMKTMG EVHACPHTLM PMRKAFKGTF
301: ISAGGFTRED GNEAVSKGRT DLVAYGRWFL ANPDLPKRFQ VDAPLNKYDR PTFYTSDPVV GYTDYPFLES TA

Arabidopsis Description

OPR112-oxophytodienoate reductase 1 [Source:UniProtKB/TrEMBL;Acc:F4I403]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.