Factsheet for VIT_18s0041g02060.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
peroxisome 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	46.44	98.32
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	94.46	94.46
VIT_18s0041g02020.t01	Wine grape	cytosol	93.93	93.93
VIT_18s0041g02270.t01	Wine grape	vacuole	39.31	89.22
VIT_18s0041g02070.t01	Wine grape	mitochondrion	82.06	83.6
VIT_18s0041g02050.t01	Wine grape	mitochondrion	76.52	83.33
VIT_18s0041g02010.t01	Wine grape	cytosol	81.27	83.02
PGSC0003DMT400048327	Potato	cytosol	37.73	79.89
PGSC0003DMT400048325	Potato	cytosol	26.91	78.46
Solyc11g032130.1.1	Tomato	mitochondrion	73.09	78.25
VIT_18s0041g02040.t01	Wine grape	cytosol	69.92	77.94
PGSC0003DMT400048344	Potato	cytosol	75.99	77.01
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	75.46	76.47
CDY20395	Canola	cytosol, mitochondrion, peroxisome	74.67	76.08
CDY45941	Canola	plastid	74.67	76.08
Solyc10g086220.1.1	Tomato	extracellular	75.2	75.8
Bra008271.1-P	Field mustard	peroxisome	74.67	75.67
PGSC0003DMT400048331	Potato	mitochondrion	69.66	75.64
VIT_18s0041g02090.t01	Wine grape	cytosol	16.36	75.61
CDX69416	Canola	mitochondrion, plastid	73.35	74.33
Bra008591.1-P	Field mustard	plastid	73.09	74.06
CDY16975	Canola	mitochondrion, plastid	72.82	73.99
Solyc11g032230.1.1	Tomato	cytosol	63.59	73.7
KRH13220	Soybean	mitochondrion, peroxisome, plastid	70.18	73.68
CDY32174	Canola	cytosol, peroxisome, plastid	15.83	73.17
PGSC0003DMT400048328	Potato	cytosol	35.36	72.83
CDY21723	Canola	cytosol, mitochondrion, peroxisome	68.34	71.35
AT1G09400.1	Thale cress	mitochondrion	60.95	71.3
AT1G76680.2	Thale cress	peroxisome	74.41	71.03
Bra031012.1-P	Field mustard	cytosol	68.34	69.81
GSMUA_Achr6P17440_001	Banana	cytosol	59.1	69.78
CDX81857	Canola	cytosol	67.81	69.27
Solyc11g032220.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	53.83	68.46
AT1G17990.1	Thale cress	mitochondrion, peroxisome, plastid	48.28	68.03
AT1G18020.1	Thale cress	mitochondrion, peroxisome, plastid	48.28	68.03
KRH20560	Soybean	mitochondrion	65.7	67.85
Bra030773.1-P	Field mustard	plastid	67.02	67.73
CDY31095	Canola	plastid	66.75	67.47
VIT_18s0122g01170.t01	Wine grape	cytoskeleton, mitochondrion, peroxisome	65.96	66.84
CDY32175	Canola	plastid	44.59	66.54
VIT_18s0122g01160.t01	Wine grape	cytosol, mitochondrion, peroxisome	63.59	64.44
PGSC0003DMT400080542	Potato	extracellular	18.73	62.83
Bra030774.1-P	Field mustard	plastid	18.47	58.33
VIT_11s0016g01230.t01	Wine grape	plastid	54.09	51.51
CDY47292	Canola	mitochondrion, plastid	40.11	49.67
PGSC0003DMT400072012	Potato	cytosol	18.21	46.94

Protein Annotations

EntrezGene:100255087	wikigene:100255087	EntrezGene:100267062	wikigene:100267062	Gene3D:3.20.20.70	MapMan:50.1.3
EMBL:AM475452	InterPro:Aldolase_TIM	ProteinID:CAN66144	ProteinID:CAN66144.1	ProteinID:CCB61629	ProteinID:CCB61629.1
UniProt:F6I449	EMBL:FN596744	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181
GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785	EntrezGene:LOC100255087	wikigene:LOC100255087	EntrezGene:LOC100267062
wikigene:LOC100267062	InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88	SUPFAM:SSF51395
UniParc:UPI00015C9FD3	ArrayExpress:VIT_18s0041g02060	EnsemblPlantsGene:VIT_18s0041g02060	EnsemblPlants:VIT_18s0041g02060.t01	RefSeq:XP_002278021	RefSeq:XP_002278021.2
RefSeq:XP_002281348	RefSeq:XP_002281348.1	:	:	:	:

Description

No Description!

Coordinates

chr18:+:27186796..27189275

Molecular Weight (calculated)

41897.7 Da

IEP (calculated)

6.426

GRAVY (calculated)

-0.362

Length

379 amino acids

Sequence
(BLAST)

001: MDGKVQGING VSAETPIPLI TPYKLGKFQL SHRVVLAPLT RQRSWNNVPQ PHAILHYSQR TSKGGLLIAE ATGVSDTAQG YPNTPGIWTK EQVEAWKPIV
101: DAVHAKGGIF FCQIWHVGRV SNTGFQPNGQ APISCTDKPL TPQIGANGID VDQFSPPRRL TTDEIPQVVK DFRLAARNAI EAGFDGVEIH GAHGYLLDQF
201: MKDQVNDRTD KYGGSLENRC RFPLEVVEAV VDEIGADKVG IRLSPFATYA EAGDSNPRAL GLYMAESLNK YGLLYCHMVE PRMKTLGEKS ECAHSLLPMR
301: KAFNGTFLVA GGYDREDGNN AVAENRADLV VYGRWFLANP DLPKRFALNA PLNKYNRETF YTPDPVLGYT DYPFLEDAE

Best Arabidopsis Sequence Match ( AT1G76690.1 )
(BLAST)

001: MEMVNAEAKQ SVPLLTPYKM GRFNLSHRVV LAPLTRQKSY GSVPQPHAIL YYSQRTSPGG FLIAEATGVS DTAQGYPDTP GIWTKEHVEA WKPIVDAVHA
101: KGGIFFCQIW HVGRVSNRGF QPRRQAPISC TGKPIMPQMR ANGIDEARFT PPRRLSIEEI PGIVNDFRLA ARNAMEAGFD GVEIHGAHGY LIDQFMKDKV
201: NDRTDEYGGS LQNRCKFALE VVDAVAKEIG PDRVGIRLSP FADYMESGDT NPEALGLYMV ESLNKYGILY CHMIEPRMKT VGEIAACSHT LMPMREAFKG
301: TFISAGGFTR EDGNEAVAKG RTDLVAYGRW FLANPDLPKR FQLDAPLNKY NRSTFYTSDP VVGYTDYPSL ESTA

Arabidopsis Description

OPR2OPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W9S3]
SUBAcon: [mitochondrion,peroxisome,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.