Factsheet for VIT_18s0041g02080.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

cytosol 4
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	94.46	94.46
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	44.06	93.3
VIT_18s0041g02020.t01	Wine grape	cytosol	92.08	92.08
VIT_18s0041g02270.t01	Wine grape	vacuole	38.26	86.83
VIT_18s0041g02070.t01	Wine grape	mitochondrion	83.91	85.48
VIT_18s0041g02050.t01	Wine grape	mitochondrion	78.36	85.34
VIT_18s0041g02010.t01	Wine grape	cytosol	82.59	84.37
PGSC0003DMT400048327	Potato	cytosol	37.73	79.89
VIT_18s0041g02040.t01	Wine grape	cytosol	71.5	79.71
Solyc11g032130.1.1	Tomato	mitochondrion	73.61	78.81
PGSC0003DMT400048344	Potato	cytosol	77.04	78.07
PGSC0003DMT400048325	Potato	cytosol	26.65	77.69
CDY20395	Canola	cytosol, mitochondrion, peroxisome	75.99	77.42
CDY45941	Canola	plastid	75.99	77.42
Solyc10g086220.1.1	Tomato	extracellular	76.78	77.39
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	76.25	77.27
Bra008271.1-P	Field mustard	peroxisome	75.99	77.01
PGSC0003DMT400048331	Potato	mitochondrion	70.45	76.5
CDX69416	Canola	mitochondrion, plastid	74.93	75.94
Bra008591.1-P	Field mustard	plastid	74.67	75.67
CDY16975	Canola	mitochondrion, plastid	73.88	75.07
KRH13220	Soybean	mitochondrion, peroxisome, plastid	70.98	74.52
Solyc11g032230.1.1	Tomato	cytosol	64.12	74.31
CDY32174	Canola	cytosol, peroxisome, plastid	15.83	73.17
VIT_18s0041g02090.t01	Wine grape	cytosol	15.83	73.17
PGSC0003DMT400048328	Potato	cytosol	35.36	72.83
AT1G09400.1	Thale cress	mitochondrion	61.74	72.22
AT1G76680.2	Thale cress	peroxisome	75.2	71.79
CDY21723	Canola	cytosol, mitochondrion, peroxisome	68.07	71.07
GSMUA_Achr6P17440_001	Banana	cytosol	59.37	70.09
Bra031012.1-P	Field mustard	cytosol	67.81	69.27
CDX81857	Canola	cytosol	67.55	69.0
Solyc11g032220.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	53.83	68.46
AT1G17990.1	Thale cress	mitochondrion, peroxisome, plastid	48.55	68.4
AT1G18020.1	Thale cress	mitochondrion, peroxisome, plastid	48.55	68.4
KRH20560	Soybean	mitochondrion	66.23	68.39
Bra030773.1-P	Field mustard	plastid	67.28	68.0
CDY31095	Canola	plastid	67.02	67.73
CDY32175	Canola	plastid	45.12	67.32
VIT_18s0122g01170.t01	Wine grape	cytoskeleton, mitochondrion, peroxisome	65.7	66.58
VIT_18s0122g01160.t01	Wine grape	cytosol, mitochondrion, peroxisome	63.32	64.17
PGSC0003DMT400080542	Potato	extracellular	18.73	62.83
Bra030774.1-P	Field mustard	plastid	18.47	58.33
VIT_11s0016g01230.t01	Wine grape	plastid	54.35	51.76
CDY47292	Canola	mitochondrion, plastid	40.9	50.65
PGSC0003DMT400072012	Potato	cytosol	18.21	46.94

Protein Annotations

EntrezGene:100244746	wikigene:100244746	Gene3D:3.20.20.70	MapMan:50.1.3	EMBL:AM437355	InterPro:Aldolase_TIM
ProteinID:CAN60665	ProteinID:CAN60665.1	ProteinID:CCB61627	ProteinID:CCB61627.1	UniProt:F6I447	EMBL:FN596744
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114
InterPro:IPR013785	EntrezGene:LOC100244746	wikigene:LOC100244746	InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893
PANTHER:PTHR22893:SF88	SUPFAM:SSF51395	TIGR:TC61395	UniParc:UPI00015C9FD1	ArrayExpress:VIT_18s0041g02080	EnsemblPlantsGene:VIT_18s0041g02080
EnsemblPlants:VIT_18s0041g02080.t01	unigene:Vvi.24872	RefSeq:XP_002281119	RefSeq:XP_002281119.1	:	:

Description

No Description!

Coordinates

chr18:+:27211388..27214493

Molecular Weight (calculated)

41940.8 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.324

Length

379 amino acids

Sequence
(BLAST)

001: MDGKVQGLNG VSAESLIPLI TPYKLGKFQL SHRVVLAPLT RQRSWNNVPQ PHAILYYSQR TSKGGLLIAE ATGVSDTAQG YPHTPGIWTK EQVEAWKPIV
101: DAVHAKGGIF FCQIWHVGRV SNTDFQPNGQ APISCTDKPL TPQIRSNGID VAQFSTPRRL TTDEIPQVVN DFRLAARNAI EAGFDGVEIH GAHGYLLDQF
201: MKDQVNDRTD KYGGSLENRC GFALEVVEAV VDEIGADKVG IRLSPFAAYA EAGDSNPKAL GLYMAESLNK YGLLYCHMVE PRMKTVGEKC ECPHSLLPMR
301: KAFNGTFLVA GGYDREDGNN ALAENRADLV AYGRWFLANP DLPKRFALNA PLNKYNRETF YTPDPVLGYT DYPFLEDIE

Best Arabidopsis Sequence Match ( AT1G76690.1 )
(BLAST)

001: MEMVNAEAKQ SVPLLTPYKM GRFNLSHRVV LAPLTRQKSY GSVPQPHAIL YYSQRTSPGG FLIAEATGVS DTAQGYPDTP GIWTKEHVEA WKPIVDAVHA
101: KGGIFFCQIW HVGRVSNRGF QPRRQAPISC TGKPIMPQMR ANGIDEARFT PPRRLSIEEI PGIVNDFRLA ARNAMEAGFD GVEIHGAHGY LIDQFMKDKV
201: NDRTDEYGGS LQNRCKFALE VVDAVAKEIG PDRVGIRLSP FADYMESGDT NPEALGLYMV ESLNKYGILY CHMIEPRMKT VGEIAACSHT LMPMREAFKG
301: TFISAGGFTR EDGNEAVAKG RTDLVAYGRW FLANPDLPKR FQLDAPLNKY NRSTFYTSDP VVGYTDYPSL ESTA

Arabidopsis Description

OPR2OPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W9S3]
SUBAcon: [mitochondrion,peroxisome,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.