Factsheet for VIT_18s0041g02020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	93.93	93.93
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	43.8	92.74
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	92.08	92.08
VIT_18s0041g02270.t01	Wine grape	vacuole	38.26	86.83
VIT_18s0041g02050.t01	Wine grape	mitochondrion	74.93	81.61
VIT_18s0041g02070.t01	Wine grape	mitochondrion	79.95	81.45
VIT_18s0041g02010.t01	Wine grape	cytosol	79.16	80.86
Solyc11g032130.1.1	Tomato	mitochondrion	72.03	77.12
PGSC0003DMT400048327	Potato	cytosol	36.41	77.09
VIT_18s0041g02040.t01	Wine grape	cytosol	68.07	75.88
PGSC0003DMT400048344	Potato	cytosol	73.88	74.87
VIT_18s0041g02090.t01	Wine grape	cytosol	16.09	74.39
Solyc10g086220.1.1	Tomato	extracellular	73.61	74.2
CDY20395	Canola	cytosol, mitochondrion, peroxisome	72.56	73.92
PGSC0003DMT400048325	Potato	cytosol	25.33	73.85
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	72.82	73.8
CDY45941	Canola	plastid	72.3	73.66
PGSC0003DMT400048331	Potato	mitochondrion	67.55	73.35
Bra008271.1-P	Field mustard	peroxisome	72.3	73.26
PGSC0003DMT400048328	Potato	cytosol	35.36	72.83
CDX69416	Canola	mitochondrion, plastid	71.24	72.19
KRH13220	Soybean	mitochondrion, peroxisome, plastid	68.6	72.02
Bra008591.1-P	Field mustard	plastid	70.98	71.93
Solyc11g032230.1.1	Tomato	cytosol	62.01	71.87
CDY16975	Canola	mitochondrion, plastid	70.45	71.58
CDY21723	Canola	cytosol, mitochondrion, peroxisome	66.75	69.7
CDY32174	Canola	cytosol, peroxisome, plastid	15.04	69.51
GSMUA_Achr6P17440_001	Banana	cytosol	58.58	69.16
AT1G09400.1	Thale cress	mitochondrion	59.1	69.14
Solyc11g032220.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	54.35	69.13
AT1G76680.2	Thale cress	peroxisome	71.5	68.26
Bra031012.1-P	Field mustard	cytosol	66.75	68.19
CDX81857	Canola	cytosol	66.49	67.92
KRH20560	Soybean	mitochondrion	65.17	67.3
AT1G17990.1	Thale cress	mitochondrion, peroxisome, plastid	46.97	66.17
AT1G18020.1	Thale cress	mitochondrion, peroxisome, plastid	46.97	66.17
Bra030773.1-P	Field mustard	plastid	64.91	65.6
CDY31095	Canola	plastid	64.64	65.33
VIT_18s0122g01170.t01	Wine grape	cytoskeleton, mitochondrion, peroxisome	64.12	64.97
CDY32175	Canola	plastid	43.54	64.96
VIT_18s0122g01160.t01	Wine grape	cytosol, mitochondrion, peroxisome	62.01	62.83
PGSC0003DMT400080542	Potato	extracellular	17.94	60.18
Bra030774.1-P	Field mustard	plastid	17.94	56.67
VIT_11s0016g01230.t01	Wine grape	plastid	53.03	50.5
CDY47292	Canola	mitochondrion, plastid	39.05	48.37
PGSC0003DMT400072012	Potato	cytosol	18.21	46.94

Protein Annotations

EntrezGene:100256781	wikigene:100256781	Gene3D:3.20.20.70	MapMan:50.1.3	EMBL:AM428956	InterPro:Aldolase_TIM
ProteinID:CAN80189	ProteinID:CAN80189.1	ProteinID:CCB61632	ProteinID:CCB61632.1	UniProt:F6I452	EMBL:FN596744
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114
InterPro:IPR013785	EntrezGene:LOC100256781	wikigene:LOC100256781	InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893
PANTHER:PTHR22893:SF88	SUPFAM:SSF51395	UniParc:UPI00015C9FDC	ArrayExpress:VIT_18s0041g02020	EnsemblPlantsGene:VIT_18s0041g02020	EnsemblPlants:VIT_18s0041g02020.t01
RefSeq:XP_002281430	RefSeq:XP_002281430.2	RefSeq:XP_010665323.1	:	:	:

Description

No Description!

Coordinates

chr18:+:27135205..27137890

Molecular Weight (calculated)

42163.0 Da

IEP (calculated)

6.189

GRAVY (calculated)

-0.407

Length

379 amino acids

Sequence
(BLAST)

001: MDGKVQRING VSAETPIPLI TPYKLGKLQL SHRVVLAPLT RQRSWNNVPQ PHAILHYSQR TSKGGLLIAE ATGVSDTAQG YPHTPGIWTK EQVEAWKPIV
101: DAVHAKGGIF FCQIWHVGRV SNTDFQPNGQ APISCTDKPL TPQIRGNGIG VDQFSPPRRL TTDEIPQVVK DFRLAARNAI EAGFDGVEIH GAHGYLLDQF
201: MKDQVNDRTD KYGGSLENRC RFALEVVEAV VDEIGADKVG IKLSPYDAFG EAEDSNPKAL GLYMAESLNK YGLLYCHMVE PRMETLGEKS ECAHSLLPMR
301: KAFNGTFLVT GGYDREDGNN VVAENRADLV VYGRWFLANP DLPKRFALNA PLNKYNRETF YTPDPIVGYN DYPFLEDTE

Best Arabidopsis Sequence Match ( AT1G76690.1 )
(BLAST)

001: MEMVNAEAKQ SVPLLTPYKM GRFNLSHRVV LAPLTRQKSY GSVPQPHAIL YYSQRTSPGG FLIAEATGVS DTAQGYPDTP GIWTKEHVEA WKPIVDAVHA
101: KGGIFFCQIW HVGRVSNRGF QPRRQAPISC TGKPIMPQMR ANGIDEARFT PPRRLSIEEI PGIVNDFRLA ARNAMEAGFD GVEIHGAHGY LIDQFMKDKV
201: NDRTDEYGGS LQNRCKFALE VVDAVAKEIG PDRVGIRLSP FADYMESGDT NPEALGLYMV ESLNKYGILY CHMIEPRMKT VGEIAACSHT LMPMREAFKG
301: TFISAGGFTR EDGNEAVAKG RTDLVAYGRW FLANPDLPKR FQLDAPLNKY NRSTFYTSDP VVGYTDYPSL ESTA

Arabidopsis Description

OPR2OPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W9S3]
SUBAcon: [mitochondrion,peroxisome,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.