Factsheet for PGSC0003DMT400048344

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048327	Potato	cytosol	42.78	89.39
PGSC0003DMT400048325	Potato	cytosol	29.95	86.15
PGSC0003DMT400048328	Potato	cytosol	40.91	83.15
PGSC0003DMT400048331	Potato	mitochondrion	77.01	82.52
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	38.5	80.45
Solyc11g032220.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	63.9	80.2
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	78.07	77.04
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	77.01	75.99
CDX69416	Canola	mitochondrion, plastid	74.6	74.6
CDY45941	Canola	plastid	74.06	74.46
Bra008591.1-P	Field mustard	plastid	74.33	74.33
CDY20395	Canola	cytosol, mitochondrion, peroxisome	73.8	74.19
Bra008271.1-P	Field mustard	peroxisome	74.06	74.06
VIT_18s0041g02020.t01	Wine grape	cytosol	74.87	73.88
VIT_18s0041g02050.t01	Wine grape	mitochondrion	68.45	73.56
CDY16975	Canola	mitochondrion, plastid	73.26	73.46
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	73.26	73.26
CDY21723	Canola	cytosol, mitochondrion, peroxisome	70.86	73.0
VIT_18s0041g02070.t01	Wine grape	mitochondrion	72.19	72.58
VIT_18s0041g02010.t01	Wine grape	cytosol	71.12	71.7
Bra031012.1-P	Field mustard	cytosol	70.59	71.16
VIT_18s0041g02270.t01	Wine grape	vacuole	31.55	70.66
CDX81857	Canola	cytosol	69.25	69.81
AT1G76680.2	Thale cress	peroxisome	73.8	69.52
GSMUA_Achr6P17440_001	Banana	cytosol	59.36	69.16
AT1G18020.1	Thale cress	mitochondrion, peroxisome, plastid	49.73	69.14
AT1G17990.1	Thale cress	mitochondrion, peroxisome, plastid	49.73	69.14
VIT_18s0041g02040.t01	Wine grape	cytosol	62.3	68.53
PGSC0003DMT400080542	Potato	extracellular	20.05	66.37
PGSC0003DMT400007644	Potato	extracellular, mitochondrion	46.26	55.1
PGSC0003DMT400064103	Potato	cytosol, nucleus, peroxisome, plastid	44.65	54.22
PGSC0003DMT400082779	Potato	cytosol	9.09	52.31
PGSC0003DMT400072012	Potato	cytosol	20.05	51.02
PGSC0003DMT400079356	Potato	plastid	54.28	50.75
CDY47292	Canola	mitochondrion, plastid	40.37	49.35
PGSC0003DMT400055707	Potato	peroxisome	47.86	46.49

Protein Annotations

EntrezGene:102598213	Gene3D:3.20.20.70	MapMan:50.1.3	InterPro:Aldolase_TIM	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	InterPro:IPR013785	UniProt:M1BMA8	InterPro:OxRdtase_FMN_N	PFAM:PF00724	EnsemblPlantsGene:PGSC0003DMG400018784
PGSC:PGSC0003DMG400018784	EnsemblPlants:PGSC0003DMT400048344	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88	SUPFAM:SSF51395	UniParc:UPI000294CBE4
RefSeq:XP_006339340.1	SEG:seg	:	:	:	:

Description

LEDI-5c protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018784]

Coordinates

chr11:+:17326953..17329179

Molecular Weight (calculated)

41769.6 Da

IEP (calculated)

6.057

GRAVY (calculated)

-0.391

Length

374 amino acids

Sequence
(BLAST)

001: MENKSGEGKQ HIPLLSPYEM GNFQLSHRVV LAPLTRQRSY GNVPQPHTIL YYSQRTTKGG LLIAEGCGIS DTAHGYKDTS GIWTYEQVEA WKPVVSAVHA
101: KGGIFFCQLW HTGRVSSKDF QPNGQAPISC TDKPSKPLIC SDVRDVAQFP PPRRLRTDEI PQIVNDFRLA ARNAIETGFD GVEIHGAHGY LIDQFMKDQV
201: NDRTDQYGGS LENRCRFALE IVEVVVNEIG GDRVGIRLSP FADYMDSGDS NPSALGLYMA ESLNKYGIAY CHMVEPRMKT LGEKVECPES LIPMRKAFKG
301: TFIVAGGYDR GDGNKAVLED RADLVAYGRM FIANPDLPRR FELDAPLNKY NMETFYTSDP VVGYTDYPFL ETTI

Best Arabidopsis Sequence Match ( AT1G76690.1 )
(BLAST)

001: MEMVNAEAKQ SVPLLTPYKM GRFNLSHRVV LAPLTRQKSY GSVPQPHAIL YYSQRTSPGG FLIAEATGVS DTAQGYPDTP GIWTKEHVEA WKPIVDAVHA
101: KGGIFFCQIW HVGRVSNRGF QPRRQAPISC TGKPIMPQMR ANGIDEARFT PPRRLSIEEI PGIVNDFRLA ARNAMEAGFD GVEIHGAHGY LIDQFMKDKV
201: NDRTDEYGGS LQNRCKFALE VVDAVAKEIG PDRVGIRLSP FADYMESGDT NPEALGLYMV ESLNKYGILY CHMIEPRMKT VGEIAACSHT LMPMREAFKG
301: TFISAGGFTR EDGNEAVAKG RTDLVAYGRW FLANPDLPKR FQLDAPLNKY NRSTFYTSDP VVGYTDYPSL ESTA

Arabidopsis Description

OPR2OPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W9S3]
SUBAcon: [mitochondrion,peroxisome,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.