Factsheet for PGSC0003DMT400055707

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3
peroxisome 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g098320.1.1	Tomato	mitochondrion	34.55	81.6
PGSC0003DMT400007644	Potato	extracellular, mitochondrion	59.74	73.25
PGSC0003DMT400064103	Potato	cytosol, nucleus, peroxisome, plastid	44.94	56.17
PGSC0003DMT400048327	Potato	cytosol	24.68	53.07
PGSC0003DMT400048331	Potato	mitochondrion	47.27	52.15
PGSC0003DMT400048325	Potato	cytosol	16.62	49.23
PGSC0003DMT400048328	Potato	cytosol	23.38	48.91
PGSC0003DMT400048344	Potato	cytosol	46.49	47.86
PGSC0003DMT400079356	Potato	plastid	41.3	39.75
PGSC0003DMT400080542	Potato	extracellular	11.43	38.94
PGSC0003DMT400072012	Potato	cytosol	12.47	32.65
PGSC0003DMT400082779	Potato	cytosol	2.6	15.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400055707	EnsemblPlantsGene:PGSC0003DMG400021627	Gene3D:3.20.20.70	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114
InterPro:Aldolase_TIM	InterPro:IPR013785	InterPro:OxRdtase_FMN_N	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88	PFAM:PF00724
PGSC:PGSC0003DMG400021627	SUPFAM:SSF51395	UniParc:UPI00029619C1	UniProt:M1BYD2	MapMan:50.1.3	:

Description

12-oxophytodienoate reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400021627]

Coordinates

chr9:+:61156149..61157493

Molecular Weight (calculated)

43336.3 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.290

Length

385 amino acids

Sequence
(BLAST)

001: MPPMTRNRSY NNTPQPHAIE YYAQRATKGG FLISESASAS DISQGSPNMP GIWTEDQKEA WKPIVDSVHS KGGIFFCQIW HPGRISNSRL NNWWFLWTNA
101: AGELKSVSEL NIHNIYMSIT YRVYLMLKPS CYVIHASNIN RVFKKKCNVY NIVYLLSSVY ICVAPHDGAC VEPTLRQLST CELAHIVDDF RIAARNAIEA
201: GFDGVEINSA NSYIIEQFFN DQVNDRSDEY GGSIENRCRF ALEVIGAIVN EIGGDRVGIK LGKKDSNPEA LLTYLASQLT KLGVLYLHVF EPRDEPRNNC
301: LQFIRKSFEG TLIASGGYNK NEGDVAISEN CADLVSFGRL FLANPDLPKR FEVNGPLNKH DRSTFYKNDP IVGYTDYPSL QLEFA

Best Arabidopsis Sequence Match ( AT1G76680.1 )
(BLAST)

001: MENGEAKQSV PLLTPYKMGR FNLSHRVVLA PLTRQRSYGN VPQPHAAIYY SQRTTPGGFL ITEATGVSDT AQGYQDTPGI WTKEHVEAWK PIVDAVHAKG
101: GIFFCQIWHV GRVSNSGFQP NGKAPISCSD KPLMPQIRSN GIDEALFTPP RRLGIEEIPG IVNDFRLAAR NAMEAGFDGV EIHGANGYLI DQFMKDTVND
201: RTDEYGGSLQ NRCKFPLEIV DAVAKEIGPD RVGIRLSPFA DYMESGDTNP GALGLYMAES LNKYGILYCH VIEARMKTMG EVHACPHTLM PMRKAFKGTF
301: ISAGGFTRED GNEAVSKGRT DLVAYGRWFL ANPDLPKRFQ VDAPLNKYDR PTFYTSDPVV GYTDYPFLES TA

Arabidopsis Description

OPR112-oxophytodienoate reductase 1 [Source:UniProtKB/TrEMBL;Acc:F4I403]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.