Factsheet for PGSC0003DMT400007644

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 7
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685
extracellular: 24773703

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g039930.2.1	Tomato	cytosol	31.53	81.15
Solyc04g039920.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	21.02	75.86
PGSC0003DMT400055707	Potato	peroxisome	73.25	59.74
PGSC0003DMT400064103	Potato	cytosol, nucleus, peroxisome, plastid	55.73	56.82
PGSC0003DMT400048327	Potato	cytosol	29.94	52.51
PGSC0003DMT400048325	Potato	cytosol	20.7	50.0
PGSC0003DMT400048328	Potato	cytosol	29.3	50.0
PGSC0003DMT400048331	Potato	mitochondrion	53.82	48.42
PGSC0003DMT400048344	Potato	cytosol	55.1	46.26
PGSC0003DMT400080542	Potato	extracellular	15.92	44.25
PGSC0003DMT400082779	Potato	cytosol	8.28	40.0
PGSC0003DMT400079356	Potato	plastid	50.0	39.25
PGSC0003DMT400072012	Potato	cytosol	15.29	32.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400007644	EnsemblPlantsGene:PGSC0003DMG400002952	Gene3D:3.20.20.70	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114
InterPro:Aldolase_TIM	InterPro:IPR013785	InterPro:OxRdtase_FMN_N	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88	PFAM:PF00724
PGSC:PGSC0003DMG400002952	SUPFAM:SSF51395	UniParc:UPI0002969B80	UniProt:M0ZTB9	MapMan:50.1.3	:

Description

12-oxophytodienoate reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400002952]

Coordinates

chr4:+:25069705..25071680

Molecular Weight (calculated)

34892.1 Da

IEP (calculated)

5.064

GRAVY (calculated)

-0.290

Length

314 amino acids

Sequence
(BLAST)

001: MASNSTSVSL LTPYKMGSFE LSHRVVMPPM TRKRSYNNTP QSHAIEYYAQ RTTKGGFLIS ESTSASDISN GSPNMPGIWT EDQAEAWKPI VDSVHGKGGV
101: FFCQLWHPGR LSDSSLNNFL IAWNAGFDGV EINAANSYII DQFLNDQVND RTDAYDGNIE NRCRLALEII GAVVEEIGPD RVGVKLSLFS KVFGRKDSNL
201: EALLTYLASE LTKLGVLYLH VFEPRDEPRC LKSIRNAFEG TLIASGGYYK TEGDEAITES CADLVSFGRL FLANPDLPKR FEVNAPLNKH DRSTFYRTDP
301: VLGYTDYPSL EIAC

Best Arabidopsis Sequence Match ( AT1G76690.1 )
(BLAST)

001: MEMVNAEAKQ SVPLLTPYKM GRFNLSHRVV LAPLTRQKSY GSVPQPHAIL YYSQRTSPGG FLIAEATGVS DTAQGYPDTP GIWTKEHVEA WKPIVDAVHA
101: KGGIFFCQIW HVGRVSNRGF QPRRQAPISC TGKPIMPQMR ANGIDEARFT PPRRLSIEEI PGIVNDFRLA ARNAMEAGFD GVEIHGAHGY LIDQFMKDKV
201: NDRTDEYGGS LQNRCKFALE VVDAVAKEIG PDRVGIRLSP FADYMESGDT NPEALGLYMV ESLNKYGILY CHMIEPRMKT VGEIAACSHT LMPMREAFKG
301: TFISAGGFTR EDGNEAVAKG RTDLVAYGRW FLANPDLPKR FQLDAPLNKY NRSTFYTSDP VVGYTDYPSL ESTA

Arabidopsis Description

OPR2OPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W9S3]
SUBAcon: [mitochondrion,peroxisome,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.