Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- peroxisome 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007644 | Potato | extracellular, mitochondrion | 75.86 | 21.02 |
| Solyc09g098320.1.1 | Tomato | mitochondrion | 31.03 | 16.56 |
| Solyc01g103390.2.1 | Tomato | plastid | 60.92 | 14.93 |
| Solyc11g032130.1.1 | Tomato | mitochondrion | 55.17 | 13.56 |
| Solyc10g086220.1.1 | Tomato | extracellular | 50.57 | 11.7 |
| Solyc07g007870.2.1 | Tomato | plastid | 50.57 | 11.11 |
| Solyc11g032220.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 33.33 | 9.73 |
| Solyc11g032230.1.1 | Tomato | cytosol | 34.48 | 9.17 |
| Solyc04g039930.2.1 | Tomato | cytosol | 8.05 | 5.74 |
| Solyc04g039910.1.1 | Tomato | cytosol | 10.34 | 3.67 |
Protein Annotations
| EnsemblPlants:Solyc04g039920.1.1 | EnsemblPlantsGene:Solyc04g039920.1 | Gene3D:3.20.20.70 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0010181 | GO:GO:0016491 | GO:GO:0055114 |
| InterPro:Aldolase_TIM | InterPro:IPR013785 | InterPro:OxRdtase_FMN_N | ncoils:Coil | PANTHER:PTHR22893 | PANTHER:PTHR22893:SF88 |
| PFAM:PF00724 | SUPFAM:SSF51395 | UniParc:UPI0002766018 | UniProt:K4BRD0 | MapMan:50.1.3 | : |
Description
No Description!
Coordinates
chr4:+:12381537..12381883
Molecular Weight (calculated)
9766.8 Da
IEP (calculated)
9.961
GRAVY (calculated)
-0.108
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MAAKSSPIPL LTPYKMGSFE LSHRVVMPPM TRNRSYNNTP HPHAIEYYVQ RATKGGFVIS ESTSASDISN GQIISLFLPF YYIKSII
001: MENGEAKQSV PLLTPYKMGR FNLSHRVVLA PLTRQRSYGN VPQPHAAIYY SQRTTPGGFL ITEATGVSDT AQGYQDTPGI WTKEHVEAWK PIVDAVHAKG
101: GIFFCQIWHV GRVSNSGFQP NGKAPISCSD KPLMPQIRSN GIDEALFTPP RRLGIEEIPG IVNDFRLAAR NAMEAGKHIL DLEFKKLKPF KILICVLVVA
201: GFDGVEIHGA NGYLIDQFMK DTVNDRTDEY GGSLQNRCKF PLEIVDAVAK EIGPDRVGIR LSPFADYMES GDTNPGALGL YMAESLNKYG ILYCHVIEAR
301: MKTMGEVHAC PHTLMPMRKA FKGTFISAGG FTREDGNEAV SKGRTDLVAY GRWFLANPDL PKRFQVDAPL NKYDRPTFYT SDPVVGYTDY PFLESTA
101: GIFFCQIWHV GRVSNSGFQP NGKAPISCSD KPLMPQIRSN GIDEALFTPP RRLGIEEIPG IVNDFRLAAR NAMEAGKHIL DLEFKKLKPF KILICVLVVA
201: GFDGVEIHGA NGYLIDQFMK DTVNDRTDEY GGSLQNRCKF PLEIVDAVAK EIGPDRVGIR LSPFADYMES GDTNPGALGL YMAESLNKYG ILYCHVIEAR
301: MKTMGEVHAC PHTLMPMRKA FKGTFISAGG FTREDGNEAV SKGRTDLVAY GRWFLANPDL PKRFQVDAPL NKYDRPTFYT SDPVVGYTDY PFLESTA
Arabidopsis Description
OPR112-oxophytodienoate reductase 1 [Source:UniProtKB/TrEMBL;Acc:F4I403]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.