Factsheet for PGSC0003DMT400048331

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g032130.1.1	Tomato	mitochondrion	90.26	88.98
PGSC0003DMT400048327	Potato	cytosol	43.27	84.36
PGSC0003DMT400048325	Potato	cytosol	30.95	83.08
PGSC0003DMT400048328	Potato	cytosol	43.55	82.61
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	40.4	78.77
PGSC0003DMT400048344	Potato	cytosol	82.52	77.01
VIT_18s0041g02050.t01	Wine grape	mitochondrion	70.49	70.69
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	76.5	70.45
CDX69416	Canola	mitochondrion, plastid	75.36	70.32
Bra008591.1-P	Field mustard	plastid	75.07	70.05
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	75.64	69.66
CDY20395	Canola	cytosol, mitochondrion, peroxisome	73.93	69.35
CDY45941	Canola	plastid	73.93	69.35
Bra008271.1-P	Field mustard	peroxisome	73.93	68.98
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	73.93	68.98
CDY16975	Canola	mitochondrion, plastid	73.64	68.9
CDY21723	Canola	cytosol, mitochondrion, peroxisome	70.77	68.04
VIT_18s0041g02070.t01	Wine grape	mitochondrion	72.21	67.74
VIT_18s0041g02020.t01	Wine grape	cytosol	73.35	67.55
GSMUA_Achr6P17440_001	Banana	cytosol	61.32	66.67
VIT_18s0041g02010.t01	Wine grape	cytosol	70.77	66.58
Bra031012.1-P	Field mustard	cytosol	70.2	66.04
CDX81857	Canola	cytosol	69.34	65.23
AT1G76680.2	Thale cress	peroxisome	73.64	64.74
AT1G18020.1	Thale cress	mitochondrion, peroxisome, plastid	49.86	64.68
AT1G17990.1	Thale cress	mitochondrion, peroxisome, plastid	49.86	64.68
VIT_18s0041g02040.t01	Wine grape	cytosol	62.75	64.41
PGSC0003DMT400080542	Potato	extracellular	20.63	63.72
VIT_18s0041g02270.t01	Wine grape	vacuole	29.51	61.68
PGSC0003DMT400007644	Potato	extracellular, mitochondrion	48.42	53.82
PGSC0003DMT400064103	Potato	cytosol, nucleus, peroxisome, plastid	45.85	51.95
PGSC0003DMT400072012	Potato	cytosol	21.2	50.34
PGSC0003DMT400079356	Potato	plastid	55.3	48.25
PGSC0003DMT400055707	Potato	peroxisome	52.15	47.27
CDY47292	Canola	mitochondrion, plastid	39.83	45.42
PGSC0003DMT400082779	Potato	cytosol	6.59	35.38

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.3	InterPro:Aldolase_TIM	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114
InterPro:IPR013785	UniProt:M1BMA2	InterPro:OxRdtase_FMN_N	PFAM:PF00724	EnsemblPlantsGene:PGSC0003DMG400018779	PGSC:PGSC0003DMG400018779
EnsemblPlants:PGSC0003DMT400048331	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88	SUPFAM:SSF51395	SignalP:SignalP-noTM	UniParc:UPI0002969303

Description

LEDI-5c protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018779]

Coordinates

chr11:-:17050675..17052654

Molecular Weight (calculated)

39389.9 Da

IEP (calculated)

8.186

GRAVY (calculated)

-0.391

Length

349 amino acids

Sequence
(BLAST)

001: MNYFLLVTLN KFCRVVLAPL TRTRSYGNVP QPHVFLYYSQ RTTKGSFLIS EAIGVSDTSH GYKDTPGIWR KDQVEAWKPI VSAVHDKGGI FFCQLWHTGR
101: ISTKDFQPNR QAPISSTDKP VKTQTPPRQL STNEIPQIVN DFRIAARNAI EAGFDGVEIH GAHGYLIDQF MKDQVNNRTD QYGGTLENRC RFALEIVEAV
201: VNEIGADRVG IRLSPFANYM DSGDSNPSAL GLYMAESLNK YGISYCHMVE PRMKTIGEKV ECPKSLVPMR KAFRGTFIVA GGYDREDGNK AVDKGRDDLV
301: AYGRLFIANL DLPKRFELDA PLNKYNRETF YTSDHVVGYT DYPFLENVV

Best Arabidopsis Sequence Match ( AT1G76690.1 )
(BLAST)

001: MEMVNAEAKQ SVPLLTPYKM GRFNLSHRVV LAPLTRQKSY GSVPQPHAIL YYSQRTSPGG FLIAEATGVS DTAQGYPDTP GIWTKEHVEA WKPIVDAVHA
101: KGGIFFCQIW HVGRVSNRGF QPRRQAPISC TGKPIMPQMR ANGIDEARFT PPRRLSIEEI PGIVNDFRLA ARNAMEAGFD GVEIHGAHGY LIDQFMKDKV
201: NDRTDEYGGS LQNRCKFALE VVDAVAKEIG PDRVGIRLSP FADYMESGDT NPEALGLYMV ESLNKYGILY CHMIEPRMKT VGEIAACSHT LMPMREAFKG
301: TFISAGGFTR EDGNEAVAKG RTDLVAYGRW FLANPDLPKR FQLDAPLNKY NRSTFYTSDP VVGYTDYPSL ESTA

Arabidopsis Description

OPR2OPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W9S3]
SUBAcon: [mitochondrion,peroxisome,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.