Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400048325 | Potato | cytosol | 66.48 | 91.54 |
| VIT_18s0041g02260.t01 | Wine grape | cytosol, peroxisome, plastid | 80.45 | 80.45 |
| PGSC0003DMT400048328 | Potato | cytosol | 75.42 | 73.37 |
| PGSC0003DMT400080542 | Potato | extracellular | 36.31 | 57.52 |
| Solyc11g032230.1.1 | Tomato | cytosol | 85.47 | 46.79 |
| PGSC0003DMT400072012 | Potato | cytosol | 37.43 | 45.58 |
| PGSC0003DMT400048331 | Potato | mitochondrion | 84.36 | 43.27 |
| PGSC0003DMT400048344 | Potato | cytosol | 89.39 | 42.78 |
| CDY21723 | Canola | cytosol, mitochondrion, peroxisome | 78.21 | 38.57 |
| Bra031012.1-P | Field mustard | cytosol | 78.21 | 37.74 |
| VIT_18s0041g02060.t01 | Wine grape | cytoskeleton, cytosol, peroxisome | 79.89 | 37.73 |
| VIT_18s0041g02080.t01 | Wine grape | cytosol, mitochondrion, peroxisome | 79.89 | 37.73 |
| VIT_18s0041g02050.t01 | Wine grape | mitochondrion | 72.07 | 37.07 |
| CDX69416 | Canola | mitochondrion, plastid | 77.09 | 36.9 |
| Bra008591.1-P | Field mustard | plastid | 77.09 | 36.9 |
| CDY45941 | Canola | plastid | 76.54 | 36.83 |
| CDY20395 | Canola | cytosol, mitochondrion, peroxisome | 76.54 | 36.83 |
| VIT_18s0041g02040.t01 | Wine grape | cytosol | 69.83 | 36.76 |
| CDX81857 | Canola | cytosol | 75.98 | 36.66 |
| Bra008271.1-P | Field mustard | peroxisome | 76.54 | 36.63 |
| VIT_18s0041g02020.t01 | Wine grape | cytosol | 77.09 | 36.41 |
| AT1G76690.1 | Thale cress | cytoskeleton, mitochondrion, peroxisome | 75.98 | 36.36 |
| CDY16975 | Canola | mitochondrion, plastid | 74.86 | 35.92 |
| VIT_18s0041g02070.t01 | Wine grape | mitochondrion | 72.63 | 34.95 |
| AT1G76680.2 | Thale cress | peroxisome | 75.42 | 34.01 |
| VIT_18s0041g02010.t01 | Wine grape | cytosol | 70.39 | 33.96 |
| PGSC0003DMT400064103 | Potato | cytosol, nucleus, peroxisome, plastid | 55.31 | 32.14 |
| PGSC0003DMT400007644 | Potato | extracellular, mitochondrion | 52.51 | 29.94 |
| GSMUA_Achr6P17440_001 | Banana | cytosol | 50.28 | 28.04 |
| CDY47292 | Canola | mitochondrion, plastid | 43.02 | 25.16 |
| PGSC0003DMT400055707 | Potato | peroxisome | 53.07 | 24.68 |
| PGSC0003DMT400079356 | Potato | plastid | 54.19 | 24.25 |
| AT1G18020.1 | Thale cress | mitochondrion, peroxisome, plastid | 35.2 | 23.42 |
| AT1G17990.1 | Thale cress | mitochondrion, peroxisome, plastid | 35.2 | 23.42 |
| PGSC0003DMT400082779 | Potato | cytosol | 3.35 | 9.23 |
| VIT_18s0041g02270.t01 | Wine grape | vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400048327 | EnsemblPlantsGene:PGSC0003DMG402018777 | Gene3D:3.20.20.70 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0010181 | GO:GO:0016491 | GO:GO:0055114 |
| InterPro:Aldolase_TIM | InterPro:IPR013785 | InterPro:OxRdtase_FMN_N | PANTHER:PTHR22893 | PANTHER:PTHR22893:SF88 | PFAM:PF00724 |
| PGSC:PGSC0003DMG402018777 | SUPFAM:SSF51395 | UniParc:UPI0002952DA8 | UniProt:M1BMA0 | MapMan:50.1.3 | : |
Description
LEDI-5c protein [Source:PGSC_GENE;Acc:PGSC0003DMG402018777]
Coordinates
chr11:-:17342070..17344921
Molecular Weight (calculated)
20042.0 Da
IEP (calculated)
4.762
GRAVY (calculated)
-0.255
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDKVNDRTD QYGGSLENRC RFALDIVEAI VNEIGADRVG IRLSPFADYM ESGDSNPSAL GLYMAESLNK YGIAYCHMVE PRMKTVGVKV ECPESLVPMR
101: KAFKGTFLVA GGYDRGDGNK VVLEDRADLV VYGRLFLANP DLPKRFELDA PLNKYIRETF YISDPVVGYT DYPFLETTA
101: KAFKGTFLVA GGYDRGDGNK VVLEDRADLV VYGRLFLANP DLPKRFELDA PLNKYIRETF YISDPVVGYT DYPFLETTA
001: MKNFNLTHRI VMAPMARMRS YGNIPQPHVA LYYCQRTTPG GLLISEATGV SETAMAYQNM PGIWRKEQIE AWKPIVDAVH SHGGIFFCQL WHAGRVSHQD
101: CQPNGESPVS STDKPFADDP SNEFTPPRRL RTDEIPTIIN DFRLAARNAT EAGFDGVEIH GAHGYLIDQF MKDSVNDRTD SYGGSLENRC RFALQVIEAV
201: SKEIGPDRVG IRLSPFADYM ESGDTDPKRL GLYMAKSLNR FEILYCHMIE PRMKTVSEIF ECRESLTPMR NAFNGTFIVA GGYTREDGNK AVAEGRTDLV
301: AYGRLFLANP DLPKRFELNA PLNK
101: CQPNGESPVS STDKPFADDP SNEFTPPRRL RTDEIPTIIN DFRLAARNAT EAGFDGVEIH GAHGYLIDQF MKDSVNDRTD SYGGSLENRC RFALQVIEAV
201: SKEIGPDRVG IRLSPFADYM ESGDTDPKRL GLYMAKSLNR FEILYCHMIE PRMKTVSEIF ECRESLTPMR NAFNGTFIVA GGYTREDGNK AVAEGRTDLV
301: AYGRLFLANP DLPKRFELNA PLNK
Arabidopsis Description
Putative 12-oxophytodienoate reductase-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYA3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.