Factsheet for VIT_18s0041g02010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g02070.t01	Wine grape	mitochondrion	97.03	96.77
VIT_18s0041g02050.t01	Wine grape	mitochondrion	90.3	96.26
VIT_18s0041g02040.t01	Wine grape	cytosol	80.32	87.65
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	84.37	82.59
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	39.62	82.12
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	83.02	81.27
VIT_18s0041g02020.t01	Wine grape	cytosol	80.86	79.16
VIT_18s0041g02270.t01	Wine grape	vacuole	34.77	77.25
Solyc11g032130.1.1	Tomato	mitochondrion	70.62	74.01
Solyc10g086220.1.1	Tomato	extracellular	73.32	72.34
CDY20395	Canola	cytosol, mitochondrion, peroxisome	72.51	72.31
CDY45941	Canola	plastid	72.51	72.31
Bra008271.1-P	Field mustard	peroxisome	72.51	71.93
CDX69416	Canola	mitochondrion, plastid	72.24	71.66
CDY16975	Canola	mitochondrion, plastid	71.97	71.58
Bra008591.1-P	Field mustard	plastid	71.97	71.39
PGSC0003DMT400048344	Potato	cytosol	71.7	71.12
KRH13220	Soybean	mitochondrion, peroxisome, plastid	69.0	70.91
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	71.43	70.86
PGSC0003DMT400048331	Potato	mitochondrion	66.58	70.77
PGSC0003DMT400048327	Potato	cytosol	33.96	70.39
Solyc11g032230.1.1	Tomato	cytosol	61.19	69.42
CDY32174	Canola	cytosol, peroxisome, plastid	15.09	68.29
VIT_18s0041g02090.t01	Wine grape	cytosol	15.09	68.29
CDY21723	Canola	cytosol, mitochondrion, peroxisome	66.58	68.04
AT1G09400.1	Thale cress	mitochondrion	59.3	67.9
AT1G76680.2	Thale cress	peroxisome	72.51	67.76
GSMUA_Achr6P17440_001	Banana	cytosol	57.95	66.98
CDY32175	Canola	plastid	45.55	66.54
CDX81857	Canola	cytosol	66.31	66.31
Bra031012.1-P	Field mustard	cytosol	66.31	66.31
PGSC0003DMT400048328	Potato	cytosol	32.88	66.3
AT1G18020.1	Thale cress	mitochondrion, peroxisome, plastid	47.98	66.17
AT1G17990.1	Thale cress	mitochondrion, peroxisome, plastid	47.98	66.17
PGSC0003DMT400048325	Potato	cytosol	23.18	66.15
CDY31095	Canola	plastid	66.85	66.13
Bra030773.1-P	Field mustard	plastid	66.85	66.13
KRH20560	Soybean	mitochondrion	64.15	64.85
VIT_18s0122g01170.t01	Wine grape	cytoskeleton, mitochondrion, peroxisome	64.69	64.17
VIT_18s0122g01160.t01	Wine grape	cytosol, mitochondrion, peroxisome	63.07	62.57
Solyc11g032220.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	49.87	62.08
Bra030774.1-P	Field mustard	plastid	19.95	61.67
PGSC0003DMT400080542	Potato	extracellular	17.25	56.64
VIT_11s0016g01230.t01	Wine grape	plastid	54.18	50.5
CDY47292	Canola	mitochondrion, plastid	39.35	47.71
PGSC0003DMT400072012	Potato	cytosol	17.52	44.22

Protein Annotations

EntrezGene:100261845	wikigene:100261845	Gene3D:3.20.20.70	MapMan:50.1.3	EMBL:AM454590	EMBL:AM457418
InterPro:Aldolase_TIM	ProteinID:CAN65589	ProteinID:CAN65589.1	ProteinID:CAN74407	ProteinID:CAN74407.1	ProteinID:CCB61633
ProteinID:CCB61633.1	UniProt:F6I453	EMBL:FN596744	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785	EntrezGene:LOC100261845	wikigene:LOC100261845
InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88	SUPFAM:SSF51395	UniParc:UPI00015C9FDD
ArrayExpress:VIT_18s0041g02010	EnsemblPlantsGene:VIT_18s0041g02010	EnsemblPlants:VIT_18s0041g02010.t01	RefSeq:XP_002278405	RefSeq:XP_002278405.1	:

Description

No Description!

Coordinates

chr18:-:27122027..27124017

Molecular Weight (calculated)

41316.8 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.429

Length

371 amino acids

Sequence
(BLAST)

001: MEGKVQGEQP LLTPYKMGKF QLSHRVVLAP LTRQRSWNNV PQPHAILYYS QRATKGGLLI TEATGVSDTA QGYAHTPGIW TKEQVEAWKP IVDAVHAKGS
101: IFNCQLWHVG RVSNTEFQPN GQAPLSSTDK ALTPQVRSNG FDVAEFTAPR RLTTDEVPRV VNDFRLAARN AMEAGFDGVE IHGAHGYLLD QFMKDQVNDR
201: TDKYGGSQEN RCRFPLEVVE AVVNEIGADK VGIRLSPFGH HAQAGDSNPT ALGRYMVESL NKYGVLYCHM VEPRIRAAGE MYEGPHSLVP LRKAFNGTFI
301: AAGGYVKEDG NNAVAEERAD LVAFGRWFLA NPDLPKRFAL NAPLNKYDRE TFYAPEPIIG YTDYPFLEDF E

Best Arabidopsis Sequence Match ( AT1G76680.1 )
(BLAST)

001: MENGEAKQSV PLLTPYKMGR FNLSHRVVLA PLTRQRSYGN VPQPHAAIYY SQRTTPGGFL ITEATGVSDT AQGYQDTPGI WTKEHVEAWK PIVDAVHAKG
101: GIFFCQIWHV GRVSNSGFQP NGKAPISCSD KPLMPQIRSN GIDEALFTPP RRLGIEEIPG IVNDFRLAAR NAMEAGFDGV EIHGANGYLI DQFMKDTVND
201: RTDEYGGSLQ NRCKFPLEIV DAVAKEIGPD RVGIRLSPFA DYMESGDTNP GALGLYMAES LNKYGILYCH VIEARMKTMG EVHACPHTLM PMRKAFKGTF
301: ISAGGFTRED GNEAVSKGRT DLVAYGRWFL ANPDLPKRFQ VDAPLNKYDR PTFYTSDPVV GYTDYPFLES TA

Arabidopsis Description

OPR112-oxophytodienoate reductase 1 [Source:UniProtKB/TrEMBL;Acc:F4I403]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.