Factsheet for VIT_11s0016g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
peroxisome 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0137g00610.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06050.1	VIT_01s0137g00610.t01	AT1G13030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g007870.2.1	Tomato	plastid	79.15	79.55
KRH19303	Soybean	nucleus	78.14	78.14
PGSC0003DMT400079356	Potato	plastid	78.14	77.75
KRH02619	Soybean	nucleus	77.64	77.64
KRH02618	Soybean	mitochondrion	71.86	75.07
AT2G06050.1	Thale cress	cytosol, plastid	73.12	74.42
CDY50415	Canola	peroxisome	72.11	73.78
TraesCS7B01G311600.1	Wheat	mitochondrion, peroxisome	72.11	73.59
CDX93099	Canola	peroxisome	71.86	73.52
Bra013161.1-P	Field mustard	peroxisome	71.61	73.26
Os08t0459600-01	Rice	cytosol	72.36	73.1
KRH19304	Soybean	mitochondrion, plastid	71.11	72.94
TraesCS7D01G405500.1	Wheat	golgi	71.36	72.82
TraesCS7A01G412400.1	Wheat	mitochondrion, peroxisome	71.11	72.56
Zm00001d050107_P001	Maize	extracellular, mitochondrion	72.61	72.43
Zm00001d032049_P002	Maize	extracellular, mitochondrion	72.11	71.93
EES13971	Sorghum	peroxisome, plastid	72.36	71.64
GSMUA_Achr7P02310_001	Banana	mitochondrion	61.06	70.85
TraesCS5B01G487600.1	Wheat	mitochondrion	62.56	65.35
HORVU7Hr1G095960.1	Barley	plastid	71.11	58.47
VIT_18s0041g02070.t01	Wine grape	mitochondrion	51.01	54.57
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	51.76	54.35
VIT_18s0041g02050.t01	Wine grape	mitochondrion	47.49	54.31
VIT_18s0041g02010.t01	Wine grape	cytosol	50.5	54.18
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	51.51	54.09
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	23.87	53.07
VIT_18s0041g02020.t01	Wine grape	cytosol	50.5	53.03
VIT_18s0122g01170.t01	Wine grape	cytoskeleton, mitochondrion, peroxisome	49.5	52.67
VIT_18s0122g01160.t01	Wine grape	cytosol, mitochondrion, peroxisome	48.49	51.6
VIT_18s0041g02270.t01	Wine grape	vacuole	21.61	51.5
VIT_18s0041g02040.t01	Wine grape	cytosol	42.46	49.71
VIT_18s0041g02090.t01	Wine grape	cytosol	9.3	45.12

Protein Annotations

EntrezGene:100262732	wikigene:100262732	MapMan:11.7.1.6	Gene3D:3.20.20.70	ProteinID:AFG73688	ProteinID:AFG73688.1
InterPro:Aldolase_TIM	ProteinID:CBI27818	ProteinID:CBI27818.3	UniProt:D7TCG0	EMBL:FN595756	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009695	GO:GO:0009987	GO:GO:0010181	GO:GO:0016491	GO:GO:0016629	GO:GO:0031408
GO:GO:0055114	InterPro:IPR013785	EMBL:JQ340011	RefSeq:NP_001267975.1	EntrezGene:OPR3	wikigene:OPR3
InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF67	SUPFAM:SSF51395	TIGR:TC55119
UniParc:UPI00019842FE	ArrayExpress:VIT_11s0016g01230	EnsemblPlantsGene:VIT_11s0016g01230	EnsemblPlants:VIT_11s0016g01230.t01	unigene:Vvi.2210	SEG:seg

Description

12-oxophytodienoate reductase 3 protein [Source:UniProtKB/TrEMBL;Acc:D7TCG0]

Coordinates

chr11:-:973758..978059

Molecular Weight (calculated)

43712.0 Da

IEP (calculated)

8.295

GRAVY (calculated)

-0.271

Length

398 amino acids

Sequence
(BLAST)

001: MAESSAEGTT TLFSPYKMGR FQLSHRVALA PMTRCRAMNG IPQPALAEYY SQRSTNGGFL ITEGTLISPT AAGFPHVPGI YTGEQVEAWK KVVEAVHAKG
101: AIIFCQLWHV GRASHQVYQP GGTGAPISST SKPIAGRWRI LMPDGSHGKY PAPRALKTSE IPEVVEHYRQ SALNAIAAGF DGIEIHGAHG YLIDQFLKDG
201: INDRTDEYGG SISNRCKFLV QVVQAVAAAI GPDRVGVRVS PAIDHLEATD SNPLNLGLAV IERLNKLQLD WGSKLTYLHV TQPRYTAYGQ TESGRHGSEE
301: EEAQLMRTWR RAYQGTFICS GGFTRELGLE AVALGDADLV SYGRLFISNP DLVLRLKVNA PLNRYIRAYF YTQDPVKGYT DYPFLNKGSE SHEPLSRL

Best Arabidopsis Sequence Match ( AT2G06050.3 )
(BLAST)

001: MTAAQGNSNE TLFSSYKMGR FDLSHRVVLA PMTRCRALNG VPNAALAEYY AQRTTPGGFL ISEGTMVSPG SAGFPHVPGI YSDEQVEAWK QVVEAVHAKG
101: GFIFCQLWHV GRASHAVYQP NGGSPISSTN KPISENRWRV LLPDGSHVKY PKPRALEASE IPRVVEDYCL SALNAIRAGF DGIEIHGAHG YLIDQFLKDG
201: INDRTDQYGG SIANRCRFLK QVVEGVVSAI GASKVGVRVS PAIDHLDATD SDPLSLGLAV VGMLNKLQGV NGSKLAYLHV TQPRYHAYGQ TESGRQGSDE
301: EEAKLMKSLR MAYNGTFMSS GGFNKELGMQ AVQQGDADLV SYGRLFIANP DLVSRFKIDG ELNKYNRKTF YTQDPVVGYT DYPFLAPFSR L

Arabidopsis Description

OPR312-oxophytodienoate reductase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUP0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.