Factsheet for GSMUA_Achr7P02310_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
peroxisome 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P01970_001
GSMUA_Achr9P07590_001
GSMUA_Achr9P17930_001
GSMUA_Achr9P17940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06050.1	GSMUA_Achr9P01970_001	AT1G13030.1	21798944
AT2G06050.1	GSMUA_Achr9P07590_001	AT1G13030.1	21798944
AT2G06050.1	GSMUA_Achr9P17930_001	AT1G13030.1	21798944
AT2G06050.1	GSMUA_Achr9P17940_001	AT1G13030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G487600.1	Wheat	mitochondrion	71.14	64.04
Os08t0459600-01	Rice	cytosol	73.47	63.96
Zm00001d050107_P001	Maize	extracellular, mitochondrion	74.34	63.91
TraesCS7D01G405500.1	Wheat	golgi	72.3	63.59
Zm00001d032049_P002	Maize	extracellular, mitochondrion	73.76	63.41
TraesCS7A01G412400.1	Wheat	mitochondrion, peroxisome	72.01	63.33
EES13971	Sorghum	peroxisome, plastid	73.76	62.94
TraesCS7B01G311600.1	Wheat	mitochondrion, peroxisome	71.43	62.82
KRH02618	Soybean	mitochondrion	67.93	61.15
VIT_11s0016g01230.t01	Wine grape	plastid	70.85	61.06
KRH19303	Soybean	nucleus	69.97	60.3
KRH19304	Soybean	mitochondrion, plastid	67.93	60.05
KRH02619	Soybean	nucleus	69.68	60.05
Solyc07g007870.2.1	Tomato	plastid	67.64	58.59
PGSC0003DMT400079356	Potato	plastid	66.76	57.25
CDX93099	Canola	peroxisome	64.72	57.07
CDY50415	Canola	peroxisome	64.43	56.81
Bra013161.1-P	Field mustard	peroxisome	63.85	56.3
AT2G06050.1	Thale cress	cytosol, plastid	64.14	56.27
GSMUA_Achr2P20790_001	Banana	mitochondrion	47.81	54.3
GSMUA_Achr3P02810_001	Banana	plastid	46.65	52.81
HORVU7Hr1G095960.1	Barley	plastid	72.59	51.45
GSMUA_Achr6P07450_001	Banana	mitochondrion	41.98	50.7
GSMUA_Achr6P17440_001	Banana	cytosol	47.23	50.47
GSMUA_Achr2P20800_001	Banana	mitochondrion	52.77	49.59

Protein Annotations

MapMan:11.7.1.6	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006629	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009620	GO:GO:0009695	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0010181	GO:GO:0010193	GO:GO:0016491	GO:GO:0016629
GO:GO:0031408	GO:GO:0048443	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr7G02310_001	EnsemblPlants:GSMUA_Achr7P02310_001	EnsemblPlants:GSMUA_Achr7T02310_001
InterPro:IPR013785	UniProt:M0TE21	InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF67
SUPFAM:SSF51395	UniParc:UPI000295C3D1	SEG:seg	:	:	:

Description

12-oxophytodienoate reductase 3 [Source:GMGC_GENE;Acc:GSMUA_Achr7G02310_001]

Coordinates

chr7:-:1786545..1791747

Molecular Weight (calculated)

38170.7 Da

IEP (calculated)

9.704

GRAVY (calculated)

-0.300

Length

343 amino acids

Sequence
(BLAST)

001: MTQRPSLFSP HQMGRFRLSH RVVLAPVTRC RAIDGIPLPA HVEYYTQRAT DGGFLITEGT VISPTGAGFP RCPGIYTREQ IDAWKKVVDA VHAKGSIIFC
101: QLWHVGRASN QIYQPGGTAA PISSTDKPVS GRWKILMPDG KYGSYARPRR LATSEIPVIV QHYRQAALNA IEAGFDGVEI HGAHGYLIDQ FLKDGINDRT
201: DAYGGSLQNR CRFLVEVTRA VTSAVGPERV AVRISPAIDH LDAYDSDPLR LGLTVIEQLN ALQRESGERL AYLHENQMMR ALREAYNGSF MCSGGFTRKL
301: ARFKLGAPLN RYVRATFYTA DPVVGYTDYP FLGQQQQQQR SKL

Best Arabidopsis Sequence Match ( AT2G06050.3 )
(BLAST)

001: MTAAQGNSNE TLFSSYKMGR FDLSHRVVLA PMTRCRALNG VPNAALAEYY AQRTTPGGFL ISEGTMVSPG SAGFPHVPGI YSDEQVEAWK QVVEAVHAKG
101: GFIFCQLWHV GRASHAVYQP NGGSPISSTN KPISENRWRV LLPDGSHVKY PKPRALEASE IPRVVEDYCL SALNAIRAGF DGIEIHGAHG YLIDQFLKDG
201: INDRTDQYGG SIANRCRFLK QVVEGVVSAI GASKVGVRVS PAIDHLDATD SDPLSLGLAV VGMLNKLQGV NGSKLAYLHV TQPRYHAYGQ TESGRQGSDE
301: EEAKLMKSLR MAYNGTFMSS GGFNKELGMQ AVQQGDADLV SYGRLFIANP DLVSRFKIDG ELNKYNRKTF YTQDPVVGYT DYPFLAPFSR L

Arabidopsis Description

OPR312-oxophytodienoate reductase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUP0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.