Factsheet for Zm00001d050107_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 2
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003872_P002
Zm00001d003875_P001
Zm00001d025291_P001
Zm00001d025294_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06050.1	Zm00001d003872_P002	AT1G13030.1	21798944
AT2G06050.1	Zm00001d003875_P001	AT1G13030.1	21798944
AT2G06050.1	Zm00001d025291_P001	AT1G13030.1	21798944
AT2G06050.1	Zm00001d025294_P002	AT1G13030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032049_P002	Maize	extracellular, mitochondrion	94.49	94.49
Os08t0459600-01	Rice	cytosol	85.96	87.06
TraesCS7D01G405500.1	Wheat	golgi	84.71	86.67
TraesCS7A01G412400.1	Wheat	mitochondrion, peroxisome	84.21	86.15
TraesCS7B01G311600.1	Wheat	mitochondrion, peroxisome	83.71	85.64
TraesCS5B01G487600.1	Wheat	mitochondrion	74.44	77.95
GSMUA_Achr7P02310_001	Banana	mitochondrion	63.91	74.34
KRH02619	Soybean	nucleus	73.93	74.12
KRH19303	Soybean	nucleus	73.43	73.62
VIT_11s0016g01230.t01	Wine grape	plastid	72.43	72.61
Solyc07g007870.2.1	Tomato	plastid	70.93	71.46
AT2G06050.1	Thale cress	cytosol, plastid	68.67	70.08
PGSC0003DMT400079356	Potato	plastid	70.18	70.0
CDY50415	Canola	peroxisome	67.92	69.67
CDX93099	Canola	peroxisome	67.92	69.67
HORVU7Hr1G095960.1	Barley	plastid	83.46	68.8
Bra013161.1-P	Field mustard	peroxisome	66.92	68.64
KRH02618	Soybean	mitochondrion	65.16	68.24
KRH19304	Soybean	mitochondrion, plastid	65.91	67.78
Zm00001d044906_P001	Maize	mitochondrion, peroxisome, plastid	50.38	53.89
Zm00001d040842_P001	Maize	cytoskeleton, cytosol, peroxisome	50.13	53.76
Zm00001d037182_P001	Maize	extracellular	50.38	53.32
Zm00001d044908_P001	Maize	mitochondrion, peroxisome, plastid	49.62	52.66
Zm00001d011097_P001	Maize	cytosol	49.87	51.96
Zm00001d003584_P001	Maize	extracellular	49.62	50.64

Protein Annotations

MapMan:11.7.1.6	Gene3D:3.20.20.70	EntrezGene:732734	ProteinID:AQK51924.1	EMBL:AY921645	InterPro:Aldolase_TIM
EMBL:BT034828	EMBL:BT055418	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785
InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF67	UniProt:Q49HD7	SUPFAM:SSF51395
UniParc:UPI000057C56C	EnsemblPlantsGene:Zm00001d050107	EnsemblPlants:Zm00001d050107_P001	EnsemblPlants:Zm00001d050107_T001	:	:

Description

12-oxo-phytodienoic acid reductase8 12-oxo-phytodienoic acid reductase8

Coordinates

chr4:+:66086547..66090296

Molecular Weight (calculated)

44223.3 Da

IEP (calculated)

7.648

GRAVY (calculated)

-0.394

Length

399 amino acids

Sequence
(BLAST)

001: MASTDRSAPA EDQQQPQRPS LFSPYQMPHF RLAHRVVLAP MTRCRAPDAL PGPALAEYYA QRSTEGGLLI SEGTIISPAG PGFPRVPGIY NQEQTDAWKK
101: VVDAVHAKGA IFFCQLWHVG RASHQVYQPG GSAPISSTDK PISSRWRILM PDGSYGKYPT PRRLATSEIP EIVEQYRQAA INAIKAGFDG IEIHGAHGYL
201: IDQFLKDGIN DRADEYGGSL SNRCRFLLEV TRAVVSAIGA DRVAVRVSPA IDHLDAYDSN PLQLGLAVVD RLNALQEETG RLAYLHVTQP RYTAYGQTES
301: GQHGSAEEES RLMRALRGAY RGTFMCSGGY TRELGVEAVE SWDADLVSYG RLFIANPDLV ERFRRDAPLN RYVRKTFYTP DPVVGYTDYP FLGQPKARM

Best Arabidopsis Sequence Match ( AT2G06050.3 )
(BLAST)

001: MTAAQGNSNE TLFSSYKMGR FDLSHRVVLA PMTRCRALNG VPNAALAEYY AQRTTPGGFL ISEGTMVSPG SAGFPHVPGI YSDEQVEAWK QVVEAVHAKG
101: GFIFCQLWHV GRASHAVYQP NGGSPISSTN KPISENRWRV LLPDGSHVKY PKPRALEASE IPRVVEDYCL SALNAIRAGF DGIEIHGAHG YLIDQFLKDG
201: INDRTDQYGG SIANRCRFLK QVVEGVVSAI GASKVGVRVS PAIDHLDATD SDPLSLGLAV VGMLNKLQGV NGSKLAYLHV TQPRYHAYGQ TESGRQGSDE
301: EEAKLMKSLR MAYNGTFMSS GGFNKELGMQ AVQQGDADLV SYGRLFIANP DLVSRFKIDG ELNKYNRKTF YTQDPVVGYT DYPFLAPFSR L

Arabidopsis Description

OPR312-oxophytodienoate reductase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUP0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.