Factsheet for VIT_18s0041g02040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g02050.t01	Wine grape	mitochondrion	88.53	86.49
VIT_18s0041g02070.t01	Wine grape	mitochondrion	90.0	82.26
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	42.65	81.01
VIT_18s0041g02010.t01	Wine grape	cytosol	87.65	80.32
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	79.71	71.5
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	77.94	69.92
PGSC0003DMT400048327	Potato	cytosol	36.76	69.83
VIT_18s0041g02020.t01	Wine grape	cytosol	75.88	68.07
CDY32174	Canola	cytosol, peroxisome, plastid	16.18	67.07
PGSC0003DMT400048325	Potato	cytosol	25.29	66.15
PGSC0003DMT400048328	Potato	cytosol	35.29	65.22
Solyc11g032130.1.1	Tomato	mitochondrion	66.76	64.12
VIT_18s0041g02270.t01	Wine grape	vacuole	31.18	63.47
PGSC0003DMT400048331	Potato	mitochondrion	64.41	62.75
PGSC0003DMT400048344	Potato	cytosol	68.53	62.3
Solyc10g086220.1.1	Tomato	extracellular	68.53	61.97
KRH13220	Soybean	mitochondrion, peroxisome, plastid	65.0	61.22
CDY45941	Canola	plastid	66.76	61.02
CDY20395	Canola	cytosol, mitochondrion, peroxisome	66.76	61.02
Bra008271.1-P	Field mustard	peroxisome	66.76	60.7
CDX69416	Canola	mitochondrion, plastid	66.76	60.7
Bra008591.1-P	Field mustard	plastid	66.47	60.43
CDY16975	Canola	mitochondrion, plastid	66.18	60.32
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	65.88	59.89
AT1G09400.1	Thale cress	mitochondrion	57.06	59.88
Solyc11g032230.1.1	Tomato	cytosol	56.76	59.02
AT1G76680.2	Thale cress	peroxisome	66.76	57.18
CDY31095	Canola	plastid	62.65	56.8
Bra030773.1-P	Field mustard	plastid	62.65	56.8
CDY21723	Canola	cytosol, mitochondrion, peroxisome	60.29	56.47
KRH20560	Soybean	mitochondrion	60.88	56.4
GSMUA_Achr6P17440_001	Banana	cytosol	53.24	56.39
CDX81857	Canola	cytosol	60.59	55.53
Solyc11g032220.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	48.53	55.37
Bra031012.1-P	Field mustard	cytosol	60.0	54.99
VIT_18s0122g01170.t01	Wine grape	cytoskeleton, mitochondrion, peroxisome	59.71	54.28
PGSC0003DMT400080542	Potato	extracellular	17.94	53.98
VIT_18s0041g02090.t01	Wine grape	cytosol	12.94	53.66
CDY32175	Canola	plastid	39.71	53.15
AT1G18020.1	Thale cress	mitochondrion, peroxisome, plastid	41.47	52.42
AT1G17990.1	Thale cress	mitochondrion, peroxisome, plastid	41.47	52.42
VIT_18s0122g01160.t01	Wine grape	cytosol, mitochondrion, peroxisome	57.65	52.41
PGSC0003DMT400072012	Potato	cytosol	18.82	43.54
CDY47292	Canola	mitochondrion, plastid	39.12	43.46
VIT_11s0016g01230.t01	Wine grape	plastid	49.71	42.46
Bra030774.1-P	Field mustard	plastid	12.94	36.67

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.3	InterPro:Aldolase_TIM	ProteinID:CCB61631	ProteinID:CCB61631.1	UniProt:F6I451
EMBL:FN596744	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	InterPro:IPR013785	InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88
SUPFAM:SSF51395	UniParc:UPI000210A86C	ArrayExpress:VIT_18s0041g02040	EnsemblPlantsGene:VIT_18s0041g02040	EnsemblPlants:VIT_18s0041g02040.t01	:

Description

No Description!

Coordinates

chr18:-:27158318..27161921

Molecular Weight (calculated)

37636.5 Da

IEP (calculated)

5.398

GRAVY (calculated)

-0.276

Length

340 amino acids

Sequence
(BLAST)

001: MGHNEDVMFP CEIKEVGLRC LISNVRVVLA PLTRQRSWNN VPQPHAILYY SQRATKGGLL ITEATGVSDT AQGYAHTQLW HVGRVSNTEF QPNGQAPISS
101: TDKALTPQIQ SNGFDVAEFS APRRLTTDEI PQVVNDFRLA ARNAMEAGFD GVEIHGAHGY LLDQVNDRTD KYGRSLENRC RFPLEVVEAV VNEIGADKVG
201: IRLSPFGHHA EAGDSNPTAL GLYMVESLNQ SGVLYCHMVE PRIRIAGEMC ECPHSLVPLR KAFNGTFIAA GGYVKEDGNN AVAEERADLV AFGRWFLANP
301: DLPKRFALNA PLNKYSRETF YAPEPIIGYT DYPFLEDIVE

Best Arabidopsis Sequence Match ( AT1G09400.1 )
(BLAST)

001: MKNFNLTHRI VMAPMARMRS YGNIPQPHVA LYYCQRTTPG GLLISEATGV SETAMAYQNM PGIWRKEQIE AWKPIVDAVH SHGGIFFCQL WHAGRVSHQD
101: CQPNGESPVS STDKPFADDP SNEFTPPRRL RTDEIPTIIN DFRLAARNAT EAGFDGVEIH GAHGYLIDQF MKDSVNDRTD SYGGSLENRC RFALQVIEAV
201: SKEIGPDRVG IRLSPFADYM ESGDTDPKRL GLYMAKSLNR FEILYCHMIE PRMKTVSEIF ECRESLTPMR NAFNGTFIVA GGYTREDGNK AVAEGRTDLV
301: AYGRLFLANP DLPKRFELNA PLNK

Arabidopsis Description

Putative 12-oxophytodienoate reductase-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.