CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16975	Canola	mitochondrion, plastid	64.38	52.81
CDX69416	Canola	mitochondrion, plastid	64.38	52.67
CDY32174	Canola	cytosol, peroxisome, plastid	14.05	52.44
PGSC0003DMT400048325	Potato	cytosol	21.9	51.54
CDY20395	Canola	cytosol, mitochondrion, peroxisome	62.09	51.08
CDY45941	Canola	plastid	61.44	50.54
AT1G76680.2	Thale cress	peroxisome	60.13	46.35
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	54.9	44.92
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	25.16	43.02
PGSC0003DMT400048327	Potato	cytosol	25.16	43.02
Solyc11g032130.1.1	Tomato	mitochondrion	48.37	41.81
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	50.65	40.9
PGSC0003DMT400048344	Potato	cytosol	49.35	40.37
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	49.67	40.11
CDY21723	Canola	cytosol, mitochondrion, peroxisome	47.39	39.94
PGSC0003DMT400048331	Potato	mitochondrion	45.42	39.83
VIT_18s0041g02070.t01	Wine grape	mitochondrion	48.04	39.52
Solyc11g032230.1.1	Tomato	cytosol	42.16	39.45
VIT_18s0041g02010.t01	Wine grape	cytosol	47.71	39.35
VIT_18s0041g02040.t01	Wine grape	cytosol	43.46	39.12
VIT_18s0041g02020.t01	Wine grape	cytosol	48.37	39.05
PGSC0003DMT400080542	Potato	extracellular	14.38	38.94
PGSC0003DMT400048328	Potato	cytosol	23.2	38.59
Solyc10g086220.1.1	Tomato	extracellular	47.06	38.3
CDX81857	Canola	cytosol	46.41	38.27
VIT_18s0041g02050.t01	Wine grape	mitochondrion	43.14	37.93
VIT_18s0041g02270.t01	Wine grape	vacuole	20.59	37.72
CDY31095	Canola	plastid	45.42	37.07
Solyc11g032220.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	33.33	34.23
GSMUA_Achr6P17440_001	Banana	cytosol	35.29	33.64
PGSC0003DMT400072012	Potato	cytosol	14.38	29.93
CDY32175	Canola	plastid	24.84	29.92
CDX93099	Canola	peroxisome	31.05	24.42
CDY50415	Canola	peroxisome	30.72	24.16
CDY28613	Canola	golgi, plastid, vacuole	16.67	13.21

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.3	GO:A0A078IAW3	UniProt:A0A078IAW3	InterPro:Aldolase_TIM	EnsemblPlants:CDY47292
ProteinID:CDY47292	ProteinID:CDY47292.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00087104001	InterPro:IPR013785	InterPro:OxRdtase_FMN_N	PFAM:PF00724
PANTHER:PTHR22893	PANTHER:PTHR22893:SF88	SUPFAM:SSF51395	TMHMM:TMhelix	UniParc:UPI0004EF1CD7	SEG:seg

Description

BnaC04g29730DBnaC04g29730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAW3]

Coordinates

chrLK032706:+:254..2387

Molecular Weight (calculated)

35180.0 Da

IEP (calculated)

10.499

GRAVY (calculated)

-0.231

Length

306 amino acids

Sequence
(BLAST)

001: MENAVMKQSI PLLTLYKIGR FNLSHRVVLA PLTRQRSYEN VAQPHAKVKF TQKKKLFKNL LIYSSISTHF DIKYQDTPGI GLKSMFSANG QAPISCTDKP
101: LIPQIRSNAI DEAMFTPPRR LSTEEIPTIV NHFRLAARNA MEADRTDDYG GSLQNPQALA VHMAESLKKY GILYCHVIEA RMKTMGEVTE CPHTLTPMRR
201: AFSGTSIDAR SFKREDGSAV EKGRTDLVAY GRWFLANPNL PKRFEVDAVL HKYMIDRRFI LLILSWVTLT ILFSVKRLIN TFYCVFSFHV IRRHCRSNRH
301: HVFMKT

Best Arabidopsis Sequence Match ( AT1G09400.1 )
(BLAST)

001: MKNFNLTHRI VMAPMARMRS YGNIPQPHVA LYYCQRTTPG GLLISEATGV SETAMAYQNM PGIWRKEQIE AWKPIVDAVH SHGGIFFCQL WHAGRVSHQD
101: CQPNGESPVS STDKPFADDP SNEFTPPRRL RTDEIPTIIN DFRLAARNAT EAGFDGVEIH GAHGYLIDQF MKDSVNDRTD SYGGSLENRC RFALQVIEAV
201: SKEIGPDRVG IRLSPFADYM ESGDTDPKRL GLYMAKSLNR FEILYCHMIE PRMKTVSEIF ECRESLTPMR NAFNGTFIVA GGYTREDGNK AVAEGRTDLV
301: AYGRLFLANP DLPKRFELNA PLNK

Arabidopsis Description

Putative 12-oxophytodienoate reductase-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.