Factsheet for PGSC0003DMT400072012

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol, peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048325	Potato	cytosol	42.18	47.69
PGSC0003DMT400048327	Potato	cytosol	45.58	37.43
PGSC0003DMT400048328	Potato	cytosol	45.58	36.41
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	42.86	35.2
PGSC0003DMT400080542	Potato	extracellular	23.81	30.97
PGSC0003DMT400048331	Potato	mitochondrion	50.34	21.2
GSMUA_Achr6P17440_001	Banana	cytosol	44.22	20.25
PGSC0003DMT400048344	Potato	cytosol	51.02	20.05
Bra031012.1-P	Field mustard	cytosol	49.66	19.68
CDY21723	Canola	cytosol, mitochondrion, peroxisome	48.3	19.56
VIT_18s0041g02040.t01	Wine grape	cytosol	43.54	18.82
CDX81857	Canola	cytosol	46.94	18.6
VIT_18s0041g02050.t01	Wine grape	mitochondrion	43.54	18.39
CDY20395	Canola	cytosol, mitochondrion, peroxisome	46.26	18.28
CDY45941	Canola	plastid	46.26	18.28
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	46.94	18.21
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	46.94	18.21
VIT_18s0041g02020.t01	Wine grape	cytosol	46.94	18.21
Bra008271.1-P	Field mustard	peroxisome	46.26	18.18
Bra008591.1-P	Field mustard	plastid	45.58	17.91
CDX69416	Canola	mitochondrion, plastid	45.58	17.91
PGSC0003DMT400064103	Potato	cytosol, nucleus, peroxisome, plastid	37.41	17.86
VIT_18s0041g02010.t01	Wine grape	cytosol	44.22	17.52
VIT_18s0041g02070.t01	Wine grape	mitochondrion	44.22	17.47
CDY16975	Canola	mitochondrion, plastid	44.22	17.43
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	44.22	17.38
AT1G76680.2	Thale cress	peroxisome	44.9	16.62
PGSC0003DMT400007644	Potato	extracellular, mitochondrion	32.65	15.29
PGSC0003DMT400079356	Potato	plastid	39.46	14.5
CDY47292	Canola	mitochondrion, plastid	29.93	14.38
PGSC0003DMT400055707	Potato	peroxisome	32.65	12.47
PGSC0003DMT400082779	Potato	cytosol	5.44	12.31
AT1G18020.1	Thale cress	mitochondrion, peroxisome, plastid	6.12	3.35
AT1G17990.1	Thale cress	mitochondrion, peroxisome, plastid	6.12	3.35
VIT_18s0041g02270.t01	Wine grape	vacuole	3.4	2.99

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.3	InterPro:Aldolase_TIM	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785	UniProt:M1CPK8	InterPro:OxRdtase_FMN_N
PFAM:PF00724	EnsemblPlantsGene:PGSC0003DMG400028018	PGSC:PGSC0003DMG400028018	EnsemblPlants:PGSC0003DMT400072012	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88
SUPFAM:SSF51395	TMHMM:TMhelix	UniParc:UPI000296692C	SEG:seg	:	:

Description

12-oxophytodienoate reductase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400028018]

Coordinates

chr00:-:20368118..20368561

Molecular Weight (calculated)

16734.3 Da

IEP (calculated)

8.900

GRAVY (calculated)

-0.262

Length

147 amino acids

Sequence
(BLAST)

001: MKTPLQKVEC LDSLVPMRKA FRGTFIVAGG YDREDGNKVV DEGRAGLVAY GCMFIANPDL PRRFELDAPL NKYSREAFYT SDPDVGYTDY PSIKYGMVML
101: RKHYIGYLLL MYKYMGLSAT SYVFTNKVIY ITINKDHLGL PQQGKES

Best Arabidopsis Sequence Match ( AT1G76690.1 )
(BLAST)

001: MEMVNAEAKQ SVPLLTPYKM GRFNLSHRVV LAPLTRQKSY GSVPQPHAIL YYSQRTSPGG FLIAEATGVS DTAQGYPDTP GIWTKEHVEA WKPIVDAVHA
101: KGGIFFCQIW HVGRVSNRGF QPRRQAPISC TGKPIMPQMR ANGIDEARFT PPRRLSIEEI PGIVNDFRLA ARNAMEAGFD GVEIHGAHGY LIDQFMKDKV
201: NDRTDEYGGS LQNRCKFALE VVDAVAKEIG PDRVGIRLSP FADYMESGDT NPEALGLYMV ESLNKYGILY CHMIEPRMKT VGEIAACSHT LMPMREAFKG
301: TFISAGGFTR EDGNEAVAKG RTDLVAYGRW FLANPDLPKR FQLDAPLNKY NRSTFYTSDP VVGYTDYPSL ESTA

Arabidopsis Description

OPR2OPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W9S3]
SUBAcon: [mitochondrion,peroxisome,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.