Factsheet for VIT_18s0041g02070.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 4
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g02050.t01	Wine grape	mitochondrion	92.74	99.14
VIT_18s0041g02010.t01	Wine grape	cytosol	96.77	97.03
VIT_18s0041g02040.t01	Wine grape	cytosol	82.26	90.0
VIT_18s0041g02260.t01	Wine grape	cytosol, peroxisome, plastid	40.59	84.36
VIT_18s0041g02080.t01	Wine grape	cytosol, mitochondrion, peroxisome	85.48	83.91
VIT_18s0041g02060.t01	Wine grape	cytoskeleton, cytosol, peroxisome	83.6	82.06
VIT_18s0041g02020.t01	Wine grape	cytosol	81.45	79.95
VIT_18s0041g02270.t01	Wine grape	vacuole	34.68	77.25
Solyc11g032130.1.1	Tomato	mitochondrion	71.77	75.42
Solyc10g086220.1.1	Tomato	extracellular	74.19	73.4
CDY20395	Canola	cytosol, mitochondrion, peroxisome	73.12	73.12
CDY45941	Canola	plastid	73.12	73.12
Bra008271.1-P	Field mustard	peroxisome	73.12	72.73
PGSC0003DMT400048327	Potato	cytosol	34.95	72.63
CDX69416	Canola	mitochondrion, plastid	72.85	72.46
PGSC0003DMT400048331	Potato	mitochondrion	67.74	72.21
PGSC0003DMT400048344	Potato	cytosol	72.58	72.19
Bra008591.1-P	Field mustard	plastid	72.58	72.19
AT1G76690.1	Thale cress	cytoskeleton, mitochondrion, peroxisome	72.58	72.19
CDY16975	Canola	mitochondrion, plastid	72.31	72.12
KRH13220	Soybean	mitochondrion, peroxisome, plastid	69.62	71.75
Solyc11g032230.1.1	Tomato	cytosol	62.1	70.64
AT1G09400.1	Thale cress	mitochondrion	60.22	69.14
CDY21723	Canola	cytosol, mitochondrion, peroxisome	67.2	68.87
AT1G76680.2	Thale cress	peroxisome	73.12	68.51
VIT_18s0041g02090.t01	Wine grape	cytosol	15.05	68.29
PGSC0003DMT400048328	Potato	cytosol	33.6	67.93
PGSC0003DMT400048325	Potato	cytosol	23.66	67.69
GSMUA_Achr6P17440_001	Banana	cytosol	58.33	67.6
CDY32175	Canola	plastid	45.97	67.32
AT1G17990.1	Thale cress	mitochondrion, peroxisome, plastid	48.66	67.29
AT1G18020.1	Thale cress	mitochondrion, peroxisome, plastid	48.66	67.29
CDX81857	Canola	cytosol	66.94	67.12
Bra031012.1-P	Field mustard	cytosol	66.94	67.12
CDY32174	Canola	cytosol, peroxisome, plastid	14.78	67.07
KRH20560	Soybean	mitochondrion	65.32	66.21
CDY31095	Canola	plastid	66.67	66.13
Bra030773.1-P	Field mustard	plastid	66.67	66.13
VIT_18s0122g01170.t01	Wine grape	cytoskeleton, mitochondrion, peroxisome	64.25	63.9
Solyc11g032220.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	50.81	63.42
VIT_18s0122g01160.t01	Wine grape	cytosol, mitochondrion, peroxisome	62.63	62.3
Bra030774.1-P	Field mustard	plastid	19.89	61.67
PGSC0003DMT400080542	Potato	extracellular	18.01	59.29
VIT_11s0016g01230.t01	Wine grape	plastid	54.57	51.01
CDY47292	Canola	mitochondrion, plastid	39.52	48.04
PGSC0003DMT400072012	Potato	cytosol	17.47	44.22

Protein Annotations

EntrezGene:100244719	wikigene:100244719	EntrezGene:100250034	wikigene:100250034	Gene3D:3.20.20.70	MapMan:50.1.3
EMBL:AM437355	EMBL:AM451693	EMBL:AM475452	InterPro:Aldolase_TIM	ProteinID:CAN60666	ProteinID:CAN60666.1
ProteinID:CAN66143	ProteinID:CAN66143.1	ProteinID:CAN74333	ProteinID:CAN74333.1	ProteinID:CCB61628	ProteinID:CCB61628.1
UniProt:F6I448	EMBL:FN596744	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181
GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785	EntrezGene:LOC100244719	wikigene:LOC100244719	EntrezGene:LOC100250034
wikigene:LOC100250034	InterPro:OxRdtase_FMN_N	PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88	SUPFAM:SSF51395
UniParc:UPI00015C9FD2	ArrayExpress:VIT_18s0041g02070	EnsemblPlantsGene:VIT_18s0041g02070	EnsemblPlants:VIT_18s0041g02070.t01	RefSeq:XP_002278356	RefSeq:XP_002278356.1
RefSeq:XP_003634577	RefSeq:XP_003634577.1	:	:	:	:

Description

No Description!

Coordinates

chr18:-:27197974..27199869

Molecular Weight (calculated)

41277.1 Da

IEP (calculated)

6.739

GRAVY (calculated)

-0.326

Length

372 amino acids

Sequence
(BLAST)

001: MEGKVPGKQP LLTPYKMGKF QLSHRVVLAP LTRQRSWNNV PQPHAILYYS QRATKGGLLI TEATGVSDTA QGYAHTPGIW TKEQVEAWKP IVDAVHAKGS
101: IFICQLWHVG RVSNTEFQPN GQAPLSSTDK ALTPQVRSNG FDVAEFTAPR RLTTDEVPRV VNDFRLAARN AMEAGFDGVE IHGAHGYLLD QFMKDQVNDR
201: TDKYGGSLEN RCRFPLEVVE AVVNEIGADK VGIRLSPFGH HAEAGDSNPT ALGLYMVESL NKYGVLYCHM VEPRIRAAGE MCECPHSLVP LRKAFNGTFI
301: AAGGYVKEDG NNAVAEERAD LVAFGRWFLA NPDLPKRFAL NAPLNKYNRE TFYAPEPIIG YTDYPFLEDI VE

Best Arabidopsis Sequence Match ( AT1G76680.1 )
(BLAST)

001: MENGEAKQSV PLLTPYKMGR FNLSHRVVLA PLTRQRSYGN VPQPHAAIYY SQRTTPGGFL ITEATGVSDT AQGYQDTPGI WTKEHVEAWK PIVDAVHAKG
101: GIFFCQIWHV GRVSNSGFQP NGKAPISCSD KPLMPQIRSN GIDEALFTPP RRLGIEEIPG IVNDFRLAAR NAMEAGFDGV EIHGANGYLI DQFMKDTVND
201: RTDEYGGSLQ NRCKFPLEIV DAVAKEIGPD RVGIRLSPFA DYMESGDTNP GALGLYMAES LNKYGILYCH VIEARMKTMG EVHACPHTLM PMRKAFKGTF
301: ISAGGFTRED GNEAVSKGRT DLVAYGRWFL ANPDLPKRFQ VDAPLNKYDR PTFYTSDPVV GYTDYPFLES TA

Arabidopsis Description

OPR112-oxophytodienoate reductase 1 [Source:UniProtKB/TrEMBL;Acc:F4I403]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.