CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 2
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27669	Soybean	mitochondrion, plastid	77.86	84.37
KRG94044	Soybean	cytosol	73.63	81.1
KRH13220	Soybean	mitochondrion, peroxisome, plastid	65.67	73.13
GSMUA_Achr6P17440_001	Banana	cytosol	55.97	70.09
KRH51591	Soybean	cytosol	62.44	66.93
KRH20560	Soybean	mitochondrion	60.7	66.48
KRH63555	Soybean	mitochondrion	11.94	62.34
KRH05151	Soybean	nucleus	54.23	61.93
KRH17523	Soybean	cytosol	60.45	61.83
KRH51594	Soybean	cytosol	10.45	53.85
KRH02618	Soybean	mitochondrion	50.5	53.28
KRH19304	Soybean	mitochondrion, plastid	50.25	52.06
KRH02619	Soybean	nucleus	51.49	52.01
KRH19303	Soybean	nucleus	51.49	52.01
KRH06010	Soybean	mitochondrion	18.66	42.61

Protein Annotations

EntrezGene:100803381	Gene3D:3.20.20.70	MapMan:50.1.3	EMBL:ACUP02000685	InterPro:Aldolase_TIM	EnsemblPlantsGene:GLYMA_01G235600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114
UniProt:I1JAQ7	InterPro:IPR013785	EnsemblPlants:KRH77822	ProteinID:KRH77822	ProteinID:KRH77822.1	InterPro:OxRdtase_FMN_N
PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF88	SUPFAM:SSF51395	UniParc:UPI00023BDCF5	:

Description

hypothetical protein

Coordinates

chr1:-:56133173..56135229

Molecular Weight (calculated)

45188.5 Da

IEP (calculated)

6.845

GRAVY (calculated)

-0.432

Length

402 amino acids

Sequence
(BLAST)

001: MAHVTLNAQK WNLSINKRQF HFKVEIEFTQ EMASPLLTPY KMGKFNLSHR VVLAPLTRQR SYDNVPQPHA ILYYSQRTSN GGLLITEATG VSDTAQGYPQ
101: TPGIWTKDHV QAWKPIVDAV HAKGGVFFCQ IWHVGRVSDS VYQPNGQAPI SSTDKPLTPQ IRSNGIDQVQ FTPPRRLRTD EIPHIVNDFR LAARNAIEAG
201: FDGVEIHGAH GYLLEQFMKD KVNDRTDEYG GSLENRCRFA LEVVEAVVNE IGADRVGIRL SPFAEYSESG DSNPKELGLY MMNALNKYGI LYCHMVEPRM
301: KTVGEKTECP HSLVPMRKAF NGTFIAAGGY DRQDGINAVA ENRADLVAYG RWFLANPDLP KRFALNAPLN KYHRETFYTS DPVLGYTDYP FLDDEESNAV
401: AS

Best Arabidopsis Sequence Match ( AT1G76690.1 )
(BLAST)

001: MEMVNAEAKQ SVPLLTPYKM GRFNLSHRVV LAPLTRQKSY GSVPQPHAIL YYSQRTSPGG FLIAEATGVS DTAQGYPDTP GIWTKEHVEA WKPIVDAVHA
101: KGGIFFCQIW HVGRVSNRGF QPRRQAPISC TGKPIMPQMR ANGIDEARFT PPRRLSIEEI PGIVNDFRLA ARNAMEAGFD GVEIHGAHGY LIDQFMKDKV
201: NDRTDEYGGS LQNRCKFALE VVDAVAKEIG PDRVGIRLSP FADYMESGDT NPEALGLYMV ESLNKYGILY CHMIEPRMKT VGEIAACSHT LMPMREAFKG
301: TFISAGGFTR EDGNEAVAKG RTDLVAYGRW FLANPDLPKR FQLDAPLNKY NRSTFYTSDP VVGYTDYPSL ESTA

Arabidopsis Description

OPR2OPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W9S3]
SUBAcon: [mitochondrion,peroxisome,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.