Factsheet for Solyc02g071280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46420.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT5G46420.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007946	Potato	plastid	94.95	96.28
VIT_10s0003g02660.t01	Wine grape	plastid	53.67	52.78
Zm00001d051090_P001	Maize	cytosol	4.89	51.61
KRH42952	Soybean	plastid	48.17	48.02
CDX77660	Canola	plastid	47.55	47.7
CDY33475	Canola	plastid	47.25	47.03
KRH59080	Soybean	plastid	48.62	46.83
AT5G46420.1	Thale cress	plastid	46.64	46.71
GSMUA_Achr8P27110_001	Banana	plastid	43.12	41.23
Os05t0566300-01	Rice	plastid	18.65	40.13
TraesCS1B01G431200.1	Wheat	cytosol	32.11	40.08
Zm00001d010278_P001	Maize	nucleus	15.9	39.69
EES18691	Sorghum	plastid	37.77	37.25
TraesCS1D01G409700.1	Wheat	plastid	37.16	37.21
TraesCS1A01G402100.1	Wheat	plastid	37.16	37.04
Zm00001d039036_P003	Maize	plastid	37.61	36.99
HORVU1Hr1G088590.2	Barley	plastid	37.77	36.59
Zm00001d022423_P002	Maize	plastid	10.7	27.24
Bra025017.1-P	Field mustard	plastid	46.33	26.37

Protein Annotations

InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.90.550.10	MapMan:35.2	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0003977	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006048	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0043022	InterPro:IPR029044	InterPro:IPR036976	UniProt:K4B8A4
HAMAP:MF_00014	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01782	PFAM:PF05239	InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf
PANTHER:PTHR11952	PANTHER:PTHR11952:SF10	InterPro:RimM_N	InterPro:RimM_N_sf	SUPFAM:SSF50346	SUPFAM:SSF50447
SUPFAM:SSF53448	EnsemblPlantsGene:Solyc02g071280.2	EnsemblPlants:Solyc02g071280.2.1	TIGRFAMs:TIGR02273	InterPro:Transl_B-barrel_sf	UniParc:UPI0002768C08
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:40767434..40777464

Molecular Weight (calculated)

74347.6 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.264

Length

654 amino acids

Sequence
(BLAST)

001: MQGSSALSCS SNSISAPVGL CCSQRLTLPF RNQRIGFLEN PSSLKIFHFH RNTTLPLLNC TATEEIVEAS ETEGLFVETG YIYSVHGLQG EVRVKATTDF
101: PELRFSQPGR RWLRQQVTGR DMIQEIELVE GRGHPGQKSW ILKFHEINTI EQAQKLVGSA LLVKNEDRPI LEEGEFYTPD LVGMKVFLKE TRELVGTVIN
201: VFNSGASDLL HVELLPNQNA RPQLEGSASG PLVWVPFVEA IVPNIDLSKR EMLITPPKGL LELNIRADER SKKERRQLEW KERKKSQKRL IAAKKILHEM
301: EQDHIFHGFR YGEKNQRSFL ANQIVDVNSI LLQHALQNKK IPYKRWSFPD FVNALQVNNT LKLSKEFFSK ENVEHSSIVS KVQEQGHCLI SSGKVAIVLA
401: LTETKLLGTS FIPEPAKPHE EIAYLHVKGL LNDSHRLLKM EDRPSVPLIV VCPAESIEYL KQLFMDHDYF SFDSEKVWFL EEEKLPVVSA SQEEENKHKI
501: LMKSPWEILQ RPAGSAGIVT VLSSQNLLEH LHVMGVEYIQ VCSGNQEFIN GEMLLGFTKS REANAGIQVF RDVGYLEEHF NIVFSIDFAR KLTKKIDKLQ
601: FEAILKPNQY VQMVEKEWVD VIPSSPSSYE FHSSIYSCLN SCPPSKVCLV DITA

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.