Factsheet for GSMUA_Achr8P27110_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051090_P001	Maize	cytosol	4.82	53.23
TraesCS1B01G431200.1	Wheat	cytosol	36.4	47.52
VIT_10s0003g02660.t01	Wine grape	plastid	46.2	47.52
KRH42952	Soybean	plastid	44.01	45.88
EES18691	Sorghum	plastid	43.86	45.25
Os05t0566300-01	Rice	plastid	20.03	45.07
Zm00001d039036_P003	Maize	plastid	43.27	44.51
KRH59080	Soybean	plastid	44.01	44.33
PGSC0003DMT400007946	Potato	plastid	41.67	44.19
TraesCS1D01G409700.1	Wheat	plastid	42.11	44.1
TraesCS1A01G402100.1	Wheat	plastid	41.96	43.75
Zm00001d010278_P001	Maize	nucleus	16.67	43.51
Solyc02g071280.2.1	Tomato	plastid	41.23	43.12
HORVU1Hr1G088590.2	Barley	plastid	41.81	42.37
CDX77660	Canola	plastid	39.62	41.56
CDY33475	Canola	plastid	39.91	41.55
AT5G46420.1	Thale cress	plastid	39.33	41.19
Zm00001d022423_P002	Maize	plastid	11.84	31.52
Bra025017.1-P	Field mustard	plastid	39.77	23.67

Protein Annotations

InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.90.550.10	MapMan:35.2	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0043022	EnsemblPlantsGene:GSMUA_Achr8G27110_001	EnsemblPlants:GSMUA_Achr8P27110_001	EnsemblPlants:GSMUA_Achr8T27110_001	InterPro:IPR029044
InterPro:IPR036976	UniProt:M0TU14	HAMAP:MF_00014	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01782	PFAM:PF05239
InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf	PANTHER:PTHR11952	PANTHER:PTHR11952:SF10	InterPro:RimM_N	InterPro:RimM_N_sf
SUPFAM:SSF50346	SUPFAM:SSF50447	SUPFAM:SSF53448	TIGRFAMs:TIGR02273	InterPro:Transl_B-barrel_sf	UniParc:UPI000294D2BF
SEG:seg	:	:	:	:	:

Description

Putative Ribosome maturation factor rimM [Source:GMGC_GENE;Acc:GSMUA_Achr8G27110_001]

Coordinates

chr8:-:30374925..30383325

Molecular Weight (calculated)

76303.4 Da

IEP (calculated)

6.874

GRAVY (calculated)

-0.174

Length

684 amino acids

Sequence
(BLAST)

001: MHRPSLLAPP RPLPLPFLPP PRPHWRFPRG PAVLHRPQRT RLDATSRLPL PILALLSSRS MVHSLHHLFP SLLGNTASLT PFLIGPVAVA AEGVLGSSEE
101: GSDDQEAKFV EVGYVSSTHG IKGELRVMPS TDFPELRFCT PGTRWLRTRI SGKELISEVQ LTGGRGHPGQ KSWIVSLSGI DTVDKAKQIV GSTFLVKEDD
201: RPDLEEGELY TPDLVGMRVV LKESGTLVGT VANVFNFGAS DLLEVMLASD DRLDSTSCGR HVWVPFVEAI VPEVDMDKRE MLITPPKGLL ELNLRSDMRP
301: KKERRQLEWK ERKRLQQRLI PAKKKLAEMC QTHVLEGLKI GEKVQKSSLA RQIVNIDCKL LQHALQSINK PLHSFPEFAG ANSAKLLRRS IRVSHEYLRN
401: HTSKQKDDSN YLLYKEGLQL LSRSKTAIIV IINGNICDGD SVPNDGGSKT SLSQFEDLLF GCNGFMKVEE ESMTVPLIVV SPAHLIQSYR ECLSDNDYFG
501: MNSEKVWVLE ELQLPVVSIP IDQNGSKILL KSPWEILQAP IGSGGFFSLL LSHNILPELN KMGVEYVQVC SLNDKATILH PLFLGLVSSC RADVGITMFE
601: SSKGEGEDEC DMIFSLRHII RLSRQIEKLQ FCAVPEQHVH VEQVDDELVT NYPDAPNSYR LHCPMYASLN SCSLDAVCVV KVFE

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.