CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46420.1	KRH10294	AT3G46090.1	17259181
AT5G46420.1	KRH23029	AT3G46090.1	17259181
AT5G46420.1	KRH24840	AT3G46090.1	17259181
AT5G46420.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42952	Soybean	plastid	80.85	83.69
Zm00001d051090_P001	Maize	cytosol	5.15	56.45
VIT_10s0003g02660.t01	Wine grape	plastid	53.17	54.29
PGSC0003DMT400007946	Potato	plastid	47.42	49.92
Solyc02g071280.2.1	Tomato	plastid	46.83	48.62
CDX77660	Canola	plastid	43.74	45.55
CDY33475	Canola	plastid	44.04	45.51
AT5G46420.1	Thale cress	plastid	43.0	44.72
GSMUA_Achr8P27110_001	Banana	plastid	44.33	44.01
TraesCS1B01G431200.1	Wheat	cytosol	31.66	41.03
Os05t0566300-01	Rice	plastid	18.26	40.79
TraesCS1A01G402100.1	Wheat	plastid	36.52	37.8
Zm00001d010278_P001	Maize	nucleus	14.43	37.4
TraesCS1D01G409700.1	Wheat	plastid	35.64	37.06
EES18691	Sorghum	plastid	35.94	36.8
Zm00001d039036_P003	Maize	plastid	35.64	36.39
HORVU1Hr1G088590.2	Barley	plastid	36.08	36.3
Zm00001d022423_P002	Maize	plastid	11.19	29.57
Bra025017.1-P	Field mustard	plastid	43.0	25.41

Protein Annotations

EntrezGene:100802788	InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.90.550.10	MapMan:35.2
UniProt:A0A0R0K2B2	EMBL:ACUP02003299	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G164500	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0043022	InterPro:IPR029044
InterPro:IPR036976	EnsemblPlants:KRH59080	ProteinID:KRH59080	ProteinID:KRH59080.1	HAMAP:MF_00014	InterPro:Nucleotide-diphossugar_trans
PFAM:PF01782	PFAM:PF05239	InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf	PANTHER:PTHR11952	PANTHER:PTHR11952:SF10
InterPro:RimM_N	InterPro:RimM_N_sf	SUPFAM:SSF50346	SUPFAM:SSF50447	SUPFAM:SSF53448	TIGRFAMs:TIGR02273
InterPro:Transl_B-barrel_sf	UniParc:UPI0006EDC433	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:35525530..35532303

Molecular Weight (calculated)

77399.0 Da

IEP (calculated)

7.036

GRAVY (calculated)

-0.354

Length

679 amino acids

Sequence
(BLAST)

001: MQIQALPPAL QRPFQPPLSL GFPFKPYFLT PTKHAPWHST NNSFVLYSRF LHAVKFRRSF ATVTATTDEA VIDDSYTTNN ERGFVNIGYI SSVHGIQGEI
101: RVKPATDFPR LRFSTPGRRW LKSKVLGGES VQEVELEEGR EHPALKSWIL KFRGIDTVEQ AKMLIGATLL VTDEDRPELE EGEFYTHDLI GMRVFMKENG
201: KLVGTVVNVF NSGANDLLQI VLDSSFDMLD KSGKSRSAED ASDQLVLVPF VEAIVPDVDM KKREMHITPP KGLLELNLRF DERSKKERRQ LEWKERKKFQ
301: KHLIAAKKKL IEMEQKHVFH GFQYGEKDQW SLLSDQIVGV NSKLLQEALQ SLERPAKRWK VAELVSAIEA KLINSIQIPE EYFLNGSENK FFRDMQEKGA
401: ELMSKGKMAI VFLLNEEERQ GSISDSNMIE NEAIDTSVLR MFQKLQQNNN LFNKYSKRSE KCPVKDRVSV PLILVSSAQK IHSLRNLFRS NNYFAFDSEK
501: VWFLEEEKLP VVSSLPEGQN KYKILMKSPW EILQSPVGSG GLISLFSKHS IVDNLIDMGV EYIEFCCPSE RTAGGNSLLF GLINSREAKI GIQISPKITD
601: LEENFDMIFS MDFVKKLTKQ SNKLQFDAIP KAHSFVEKVD KEWVTVTSST PNSYELSCSI HDSLNACSLD KVCIVEVTE

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.