Factsheet for VIT_10s0003g02660.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007946	Potato	plastid	53.38	55.04
KRH42952	Soybean	plastid	54.14	54.88
Zm00001d051090_P001	Maize	cytosol	5.11	54.84
Solyc02g071280.2.1	Tomato	plastid	52.78	53.67
KRH59080	Soybean	plastid	54.29	53.17
CDY33475	Canola	plastid	50.53	51.14
CDX77660	Canola	plastid	49.62	50.61
AT5G46420.1	Thale cress	plastid	48.57	49.46
GSMUA_Achr8P27110_001	Banana	plastid	47.52	46.2
Os05t0566300-01	Rice	plastid	20.0	43.75
TraesCS1B01G431200.1	Wheat	cytosol	33.38	42.37
Zm00001d010278_P001	Maize	nucleus	16.54	41.98
EES18691	Sorghum	plastid	40.15	40.27
TraesCS1A01G402100.1	Wheat	plastid	39.25	39.79
Zm00001d039036_P003	Maize	plastid	39.7	39.7
TraesCS1D01G409700.1	Wheat	plastid	38.65	39.36
HORVU1Hr1G088590.2	Barley	plastid	38.95	38.37
Bra025017.1-P	Field mustard	plastid	49.62	28.72
Zm00001d022423_P002	Maize	plastid	10.98	28.4

Protein Annotations

EntrezGene:100251997	wikigene:100251997	InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.90.550.10
MapMan:35.2	ProteinID:CBI30811	ProteinID:CBI30811.3	ncoils:Coil	UniProt:D7TJY9	EMBL:FN595992
GO:GO:0003674	GO:GO:0003824	GO:GO:0003977	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006048	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0043022	InterPro:IPR029044	InterPro:IPR036976	EntrezGene:LOC100251997
wikigene:LOC100251997	HAMAP:MF_00014	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01782	PFAM:PF05239	InterPro:PRC-brl_dom
InterPro:PRC_barrel-like_sf	PANTHER:PTHR11952	PANTHER:PTHR11952:SF10	InterPro:RimM_N	InterPro:RimM_N_sf	SUPFAM:SSF50346
SUPFAM:SSF50447	SUPFAM:SSF53448	TIGRFAMs:TIGR02273	InterPro:Transl_B-barrel_sf	UniParc:UPI00015CCC0F	ArrayExpress:VIT_10s0003g02660
EnsemblPlantsGene:VIT_10s0003g02660	EnsemblPlants:VIT_10s0003g02660.t01	unigene:Vvi.22937	RefSeq:XP_002271571	RefSeq:XP_002271571.1	SEG:seg

Description

No Description!

Coordinates

chr10:-:4638516..4653523

Molecular Weight (calculated)

74671.7 Da

IEP (calculated)

6.684

GRAVY (calculated)

-0.347

Length

665 amino acids

Sequence
(BLAST)

001: MQRSSLLCSS SSFSPLPTVL PTSNHFALPV RGRPTRPVVA SVRLPLTRLR NYRHTLSPLH STATEEVLET SKVESEFVEV GYISSVHGLQ GEIRVKPNTD
101: FPELRFAEPG IRWLRQQFSG KETIREVELV EGRGHPGQKT WILKFGGIDT VEEAKQLVGS SLLVREDDRP ELEEGEFYSR DLLGMRVTLK ETGEPVGTVV
201: NVFSTGANDL LQVMLDPSVK TPDHTGNPKS ETGVSGPLVW VPFVEAIVPN VDMNKREMQI TPPKGLLELN LRSHERSKKE RRQLEWKQRR KFQRRLIAAK
301: KKLHEMEQQH VFHGFRFGQK AQRSLLADQI VGVNSKLLQQ ALQNIELSSQ RWSSSEFIST KLTKLGQRTL KVSKKCLTTP GSEEKLDSNF ELQEKGLHLM
401: SKGKMAIVLF VNDSEKHGRC SVPELVDSES AGNSTSFLQT LLSDDRISLK KEDRVSVPLI MVSPAHEVHS LENLFSNHDH FAFDPKKVWF LEDEKLPVVS
501: NSLGGENTQK ILMKSPWEIL QTSVGSGGVI SLLSSENILD NLSEMGVEYI EICSVNEEFV SGHSLLGLVS SLESDVGIQI SEGIEDIEEN FHMIFSMKFM
601: SKLAKQMKKL QFHGIPKLNS HVEMVEKEWV DVTPTSPNSL ELGCSIYSSL NACSLDKVCV VEIRE

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.