Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77660 | Canola | plastid | 84.38 | 84.51 |
| CDY33475 | Canola | plastid | 84.99 | 84.47 |
| VIT_10s0003g02660.t01 | Wine grape | plastid | 49.46 | 48.57 |
| PGSC0003DMT400007946 | Potato | plastid | 47.01 | 47.6 |
| Bra025017.1-P | Field mustard | plastid | 83.61 | 47.52 |
| Zm00001d051090_P001 | Maize | cytosol | 4.44 | 46.77 |
| Solyc02g071280.2.1 | Tomato | plastid | 46.71 | 46.64 |
| KRH42952 | Soybean | plastid | 44.1 | 43.9 |
| KRH59080 | Soybean | plastid | 44.72 | 43.0 |
| GSMUA_Achr8P27110_001 | Banana | plastid | 41.19 | 39.33 |
| Zm00001d010278_P001 | Maize | nucleus | 15.62 | 38.93 |
| TraesCS1B01G431200.1 | Wheat | cytosol | 30.47 | 37.98 |
| Os05t0566300-01 | Rice | plastid | 17.46 | 37.5 |
| TraesCS1A01G402100.1 | Wheat | plastid | 35.68 | 35.52 |
| EES18691 | Sorghum | plastid | 35.83 | 35.29 |
| TraesCS1D01G409700.1 | Wheat | plastid | 34.61 | 34.61 |
| Zm00001d039036_P003 | Maize | plastid | 35.22 | 34.59 |
| HORVU1Hr1G088590.2 | Barley | plastid | 35.22 | 34.07 |
| Zm00001d022423_P002 | Maize | plastid | 10.57 | 26.85 |
Protein Annotations
| InterPro:16S_RimM | Gene3D:2.30.30.240 | Gene3D:2.40.30.60 | Gene3D:3.90.550.10 | MapMan:35.2 | EntrezGene:834685 |
| ProteinID:AED95383.1 | ArrayExpress:AT5G46420 | EnsemblPlantsGene:AT5G46420 | RefSeq:AT5G46420 | TAIR:AT5G46420 | RefSeq:AT5G46420-TAIR-G |
| EnsemblPlants:AT5G46420.1 | TAIR:AT5G46420.1 | ProteinID:BAB10810.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003977 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006048 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0043022 |
| GO:GO:0070569 | InterPro:IPR029044 | InterPro:IPR036976 | HAMAP:MF_00014 | RefSeq:NP_568663.2 | InterPro:Nucleotide-diphossugar_trans |
| PFAM:PF01782 | PFAM:PF05239 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | InterPro:PRC-brl_dom | InterPro:PRC_barrel-like_sf | PANTHER:PTHR11952 | PANTHER:PTHR11952:SF10 |
| UniProt:Q9FHG3 | InterPro:RimM_N | InterPro:RimM_N_sf | SUPFAM:SSF50346 | SUPFAM:SSF50447 | SUPFAM:SSF53448 |
| TIGRFAMs:TIGR02273 | InterPro:Transl_B-barrel_sf | UniParc:UPI00000A1315 | SEG:seg | : | : |
Description
16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
Coordinates
chr5:+:18829436..18833060
Molecular Weight (calculated)
73788.2 Da
IEP (calculated)
5.683
GRAVY (calculated)
-0.382
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.