Factsheet for Zm00001d010278_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051090_P001	Maize	cytosol	17.56	74.19
Os05t0566300-01	Rice	plastid	56.49	48.68
Zm00001d022423_P002	Maize	plastid	47.71	48.64
Zm00001d039036_P003	Maize	plastid	69.85	27.52
EES18691	Sorghum	plastid	67.56	26.7
TraesCS1B01G431200.1	Wheat	cytosol	48.47	24.24
TraesCS1D01G409700.1	Wheat	plastid	55.73	22.36
TraesCS1A01G402100.1	Wheat	plastid	55.73	22.26
HORVU1Hr1G088590.2	Barley	plastid	54.96	21.33
GSMUA_Achr8P27110_001	Banana	plastid	43.51	16.67
VIT_10s0003g02660.t01	Wine grape	plastid	41.98	16.54
PGSC0003DMT400007946	Potato	plastid	39.31	15.97
Solyc02g071280.2.1	Tomato	plastid	39.69	15.9
AT5G46420.1	Thale cress	plastid	38.93	15.62
CDY33475	Canola	plastid	38.17	15.22
CDX77660	Canola	plastid	36.64	14.72
KRH42952	Soybean	plastid	36.64	14.63
KRH59080	Soybean	plastid	37.4	14.43
Bra025017.1-P	Field mustard	plastid	37.79	8.62

Protein Annotations

InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	MapMan:35.2	UniProt:A0A1D6FQ70	ProteinID:AQK93774.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0043022	InterPro:IPR036976	HAMAP:MF_00014	PFAM:PF01782	PFAM:PF05239	InterPro:PRC-brl_dom
InterPro:PRC_barrel-like_sf	PANTHER:PTHR11952	PANTHER:PTHR11952:SF10	InterPro:RimM_N	InterPro:RimM_N_sf	SUPFAM:SSF50346
TIGRFAMs:TIGR02273	UniParc:UPI000843D3C1	EnsemblPlantsGene:Zm00001d010278	EnsemblPlants:Zm00001d010278_P001	EnsemblPlants:Zm00001d010278_T001	SEG:seg

Description

16S rRNA processing protein RimM family

Coordinates

chr8:+:107106041..107110813

Molecular Weight (calculated)

28942.6 Da

IEP (calculated)

10.242

GRAVY (calculated)

-0.574

Length

262 amino acids

Sequence
(BLAST)

001: MAGSESRRAG AVEQPKIGSG NVFAVLETLK KKKKPADKGA KPAAREDPKP DPGTRWLRAR AAGKQQVREF ELVRGRAHTG KKSWIVSFDG INNLDEARQI
101: VGSAILVKAR DRPEIEDDEF YSLDLVGMRV IVKDTGKLVG IVGQGFNFGG GDLLQVIMGS SEGTAVDPDS ENQDSNSSRE HVWIPFAEDI VPDVDMASRE
201: MRITPPKGLL ELNSRSNKRS KKERHAMVRS ASSFSSIHAR IYSHDLHLKR NKECVRSIVL KC

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.