Factsheet for Bra025017.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33475	Canola	plastid	54.22	94.83
CDX77660	Canola	plastid	52.48	92.48
AT5G46420.1	Thale cress	plastid	47.52	83.61
VIT_10s0003g02660.t01	Wine grape	plastid	28.72	49.62
Zm00001d051090_P001	Maize	cytosol	2.61	48.39
PGSC0003DMT400007946	Potato	plastid	26.54	47.29
Solyc02g071280.2.1	Tomato	plastid	26.37	46.33
KRH42952	Soybean	plastid	25.15	44.05
KRH59080	Soybean	plastid	25.41	43.0
GSMUA_Achr8P27110_001	Banana	plastid	23.67	39.77
TraesCS1B01G431200.1	Wheat	cytosol	17.49	38.36
Os05t0566300-01	Rice	plastid	10.01	37.83
Zm00001d010278_P001	Maize	nucleus	8.62	37.79
TraesCS1A01G402100.1	Wheat	plastid	20.19	35.37
EES18691	Sorghum	plastid	20.1	34.84
TraesCS1D01G409700.1	Wheat	plastid	19.76	34.76
Zm00001d039036_P003	Maize	plastid	19.93	34.44
HORVU1Hr1G088590.2	Barley	plastid	20.19	34.37
Zm00001d022423_P002	Maize	plastid	6.18	27.63

Protein Annotations

InterPro:16S_RimM	MapMan:17.1.2.1.33	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.80.10.10	Gene3D:3.90.550.10
EnsemblPlantsGene:Bra025017	EnsemblPlants:Bra025017.1	EnsemblPlants:Bra025017.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006139	GO:GO:0006364	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0043022	InterPro:IPR029044	InterPro:IPR032675	InterPro:IPR036976
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_3	UniProt:M4E8B1	HAMAP:MF_00014	InterPro:Nucleotide-diphossugar_trans	PFAM:PD003823
PFAM:PF01655	PFAM:PF01782	PFAM:PF05239	PFAM:PF07725	InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf
PANTHER:PTHR11952	PANTHER:PTHR11952:SF10	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_sf	InterPro:RimM_N	InterPro:RimM_N_sf
SMART:SM01393	SUPFAM:SSF46785	SUPFAM:SSF50346	SUPFAM:SSF50447	SUPFAM:SSF52042	SUPFAM:SSF52058
SUPFAM:SSF53448	TIGRFAMs:TIGR02273	InterPro:Transl_B-barrel_sf	UniParc:UPI000253FB80	InterPro:WH_DNA-bd_sf	SEG:seg

Description

AT5G46420 (E=0.0) | 16S rRNA processing protein RimM family

Coordinates

chrA06:-:24707901..24716943

Molecular Weight (calculated)

131116.0 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.391

Length

1149 amino acids

Sequence
(BLAST)

0001: MLRACALLCS STPITFPPVQ LFNPNNTSLH FQTFELSRPV SASTRAPCHF SLVGSGGRCS SFTVRSTATE EAVETGSDSK MDLVEVGFLS GVHGLQGEIC
0101: IKPNTDFPDL RFSKPGRRWL KQQLMGQDKI DEVELVEGRP HPAQKSWILK FRGLDDVDQV RQLVGATLLA EEDDRPDLDD GEFYSRDLLG MRVLLKETGQ
0201: LVGTVANVFD NGGNDLLHVL LDSSMEACNG SAKTNQLVWI PFVDAIVPDV DLERREMYIT PPKGLLEVNM RADERSKKER RQLEWKERKK QQKRLIAAKK
0301: KLCELEQKHV FDGLRFGEKS QRSLLADHIL DVNSTLLQKA LQSIENSSKK RWNVTEEINA LRARESDWTL NVSRECLSFD ASKEKVGDNF SYLQQGKSLF
0401: SEGKVSICLV LNDHETEQLE GEDGPVSYLQ TLLDDEQRFL KEEERACVPL IIVSPEHAIE DLRNLFQEND YFGFESDKVW FLKEETLPVV CSSPEEPKKH
0501: KILMKSPWEI LKSPVGSGGV LSVLASHGIT DSLSSLAIDF LQVHSIETRS QTPQHYINQM LVGFVSTKGG EIGIQVTEES EVKNMEMTFT LKFLKRLKGK
0601: IEFEAVMKMN SHVQMVEKEW VESVPTEPNS FEFRSDVYSV LMKERRLRDL HARSRNGGSV ANEEGREEEE SWRRPKGIDS RVRRKFKGVT LMPNVGYGSD
0701: KKTRHYLPHG FKKFVVHNSA DLELLMMHNR TYCAEIAHNV STKKRKAIVE RASQLDIVVT NRLASLPLGL KVLGAYLRGR DKEDWIDMIP SLRSRLNGKI
0801: ERTLIVSYEG LNNKKDKAIF RHISCIFNGE QVDHIKMLLK DSDLDFNIGF KNLVDKSLVH VRRDSVEMHC LLQDMGKEIV RAQSDEPGER EFLMDSKEIC
0901: DVLEDNTGTK KVLGILLDMD ETDELHIHKN AFKGMRDLFF LKIYNAKKWD KKIRWCLQKG FDYLPPKLRL LRLDGYPMKY MPSNFRPENL VELQMSESKL
1001: QKLWEGVHSL AGLRVMDLKG SKNLEEVPDL SMATNLQILD LDYCSSLVEL TSSIQHLNKL AQLCMSCCEN LETLPTGIYL QSLDKLFLDG CSKLKILPDI
1101: STNISTLILD ETAIDEFHFI FRLKKPIILG FRKTKIEKLW AIEQVCSLS

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.