Factsheet for Os05t0566300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051090_P001	Maize	cytosol	13.16	64.52
Zm00001d010278_P001	Maize	nucleus	48.68	56.49
Zm00001d022423_P002	Maize	plastid	35.2	41.63
EES18691	Sorghum	plastid	70.39	32.28
Zm00001d039036_P003	Maize	plastid	69.74	31.88
TraesCS1D01G409700.1	Wheat	plastid	68.09	31.7
TraesCS1A01G402100.1	Wheat	plastid	67.43	31.25
HORVU1Hr1G088590.2	Barley	plastid	67.76	30.52
TraesCS1B01G431200.1	Wheat	cytosol	43.09	25.0
GSMUA_Achr8P27110_001	Banana	plastid	45.07	20.03
VIT_10s0003g02660.t01	Wine grape	plastid	43.75	20.0
PGSC0003DMT400007946	Potato	plastid	40.13	18.91
Solyc02g071280.2.1	Tomato	plastid	40.13	18.65
KRH42952	Soybean	plastid	39.47	18.29
KRH59080	Soybean	plastid	40.79	18.26
AT5G46420.1	Thale cress	plastid	37.5	17.46
CDY33475	Canola	plastid	37.17	17.2
CDX77660	Canola	plastid	36.84	17.18
Bra025017.1-P	Field mustard	plastid	37.83	10.01

Protein Annotations

InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	MapMan:35.2	ProteinID:AAU10657.1	EMBL:AK099641
ProteinID:BAF18255.1	ProteinID:BAS95372.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0043022	InterPro:IPR036976	HAMAP:MF_00014	EnsemblPlantsGene:Os05g0566300
EnsemblPlants:Os05t0566300-01	PFAM:PF01782	PFAM:PF05239	InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf	PANTHER:PTHR11952
PANTHER:PTHR11952:SF10	UniProt:Q688X2	InterPro:RimM_N	InterPro:RimM_N_sf	SUPFAM:SSF50346	SUPFAM:SSF50447
SignalP:SignalP-noTM	TIGRFAMs:TIGR02273	InterPro:Transl_B-barrel_sf	UniParc:UPI000042ABA6	SEG:seg	:

Description

PRC-barrel domain containing protein. (Os05t0566300-01)

Coordinates

chr5:+:28183127..28188674

Molecular Weight (calculated)

33096.6 Da

IEP (calculated)

5.750

GRAVY (calculated)

-0.238

Length

304 amino acids

Sequence
(BLAST)

001: MAPPATASAS ASAPVSLLFL SLPLSPSSCR GLPAPHTHLP PRRLALAPAR LGAALLSSLG DAQEEEEYDD EEEEELVVVG YVSGAHGVRG DVLVSPRTDF
101: PQLRFATPGK RWLRARAAGK QQVKEFELVR GRAHTGKKSW IVTFDGVDSV DEARQIVGSA ILVKVGDRPK MEEDEIYSLD LVGMRVIVKD TGKLVGTVGQ
201: VFNFGAGDLL QVMVGGTEDT VSQPNSENQG STPSGEHVWI PFAEDIVPDI DMESREMWIT PPKGLLELNA RSDKRSKKER RAMVRSASSF SCMLCSMYKA
301: FFRT

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.