Factsheet for Zm00001d022423_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051090_P001	Maize	cytosol	17.12	70.97
Zm00001d010278_P001	Maize	nucleus	48.64	47.71
Os05t0566300-01	Rice	plastid	41.63	35.2
Zm00001d039036_P003	Maize	plastid	50.19	19.4
EES18691	Sorghum	plastid	48.64	18.85
TraesCS1B01G431200.1	Wheat	cytosol	35.41	17.37
TraesCS1D01G409700.1	Wheat	plastid	38.91	15.31
TraesCS1A01G402100.1	Wheat	plastid	38.13	14.94
HORVU1Hr1G088590.2	Barley	plastid	38.91	14.81
GSMUA_Achr8P27110_001	Banana	plastid	31.52	11.84
KRH42952	Soybean	plastid	28.79	11.28
KRH59080	Soybean	plastid	29.57	11.19
VIT_10s0003g02660.t01	Wine grape	plastid	28.4	10.98
CDY33475	Canola	plastid	28.02	10.96
PGSC0003DMT400007946	Potato	plastid	27.24	10.85
CDX77660	Canola	plastid	27.24	10.74
Solyc02g071280.2.1	Tomato	plastid	27.24	10.7
AT5G46420.1	Thale cress	plastid	26.85	10.57
Bra025017.1-P	Field mustard	plastid	27.63	6.18

Protein Annotations

EnsemblPlants:Zm00001d022423_P002	EnsemblPlants:Zm00001d022423_T002	EnsemblPlantsGene:Zm00001d022423	Gene3D:3.40.250.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR036873	InterPro:Rhodanese-like_dom_sf	PANTHER:PTHR11364	PANTHER:PTHR11364:SF12	ProteinID:ONM60520.1
SEG:seg	SUPFAM:SSF52821	TMHMM:TMhelix	UniParc:UPI0008441270	UniProt:A0A1D6IMK6	MapMan:35.2

Description

16S rRNA processing protein RimM family

Coordinates

chr7:-:177355085..177359741

Molecular Weight (calculated)

29159.8 Da

IEP (calculated)

4.887

GRAVY (calculated)

-0.249

Length

257 amino acids

Sequence
(BLAST)

001: MQHNQVMKHE LYISFQVPSS VTLNILSNVW RPRSLGLPVA RRSVMAQDDP VVSAQWMHEH LVMPDVKVLD ASWYMPVENR ESWKEYQVFS ISYLIFLFEI
101: IVGAKVFWYP QVAHIPGALF FDLDGIVDRT TDARQIVGSA VLVKARDRPE IEDDEFYSLD LYCQGKLVGT VGQGFNFGGG DLLQVIMGSS EGTTVDPDSE
201: NQDSISSREH VWTPFAEDIV PDVDMGSREM RITPPKGLLE LNSRSDKRSK KERHAMP

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.