Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G431200.1 | Wheat | cytosol | 76.88 | 95.8 |
| TraesCS1A01G402100.1 | Wheat | plastid | 92.8 | 92.38 |
| HORVU1Hr1G088590.2 | Barley | plastid | 89.74 | 86.81 |
| Os05t0566300-01 | Rice | plastid | 31.7 | 68.09 |
| EES18691 | Sorghum | plastid | 68.3 | 67.27 |
| Zm00001d039036_P003 | Maize | plastid | 67.38 | 66.17 |
| Zm00001d010278_P001 | Maize | nucleus | 22.36 | 55.73 |
| Zm00001d051090_P001 | Maize | cytosol | 5.21 | 54.84 |
| GSMUA_Achr8P27110_001 | Banana | plastid | 44.1 | 42.11 |
| Zm00001d022423_P002 | Maize | plastid | 15.31 | 38.91 |
| VIT_10s0003g02660.t01 | Wine grape | plastid | 39.36 | 38.65 |
| PGSC0003DMT400007946 | Potato | plastid | 37.52 | 37.98 |
| KRH42952 | Soybean | plastid | 37.52 | 37.35 |
| Solyc02g071280.2.1 | Tomato | plastid | 37.21 | 37.16 |
| KRH59080 | Soybean | plastid | 37.06 | 35.64 |
| CDY33475 | Canola | plastid | 35.07 | 34.86 |
| CDX77660 | Canola | plastid | 34.76 | 34.82 |
| AT5G46420.1 | Thale cress | plastid | 34.61 | 34.61 |
| Bra025017.1-P | Field mustard | plastid | 34.76 | 19.76 |
Protein Annotations
| InterPro:16S_RimM | Gene3D:2.30.30.240 | Gene3D:2.40.30.60 | Gene3D:3.90.550.10 | MapMan:35.2 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0043022 | GO:GO:0070569 |
| InterPro:IPR029044 | InterPro:IPR036976 | HAMAP:MF_00014 | InterPro:Nucleotide-diphossugar_trans | PFAM:PF01704 | PFAM:PF01782 |
| PFAM:PF05239 | InterPro:PRC-brl_dom | InterPro:PRC_barrel-like_sf | PANTHER:PTHR11952 | PANTHER:PTHR11952:SF10 | InterPro:RimM_N |
| InterPro:RimM_N_sf | SUPFAM:SSF50346 | SUPFAM:SSF50447 | SUPFAM:SSF53448 | TIGRFAMs:TIGR02273 | EnsemblPlantsGene:TraesCS1D01G409700 |
| EnsemblPlants:TraesCS1D01G409700.1 | InterPro:Transl_B-barrel_sf | InterPro:UDPGP_fam | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:+:471590874..471595627
Molecular Weight (calculated)
72517.2 Da
IEP (calculated)
5.077
GRAVY (calculated)
-0.381
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPASTSAP VSLSLPLRPS PCRLLPAAFS RPSPRRLALA PARPAAALLS SPSPSQAQHE DDEEEEEEEE EEYGEDEELV EEDELVEVGY VSGAHGVRGD
101: VLVSPRTDFP ELRFATPGKR WLRARAAGKM QVRELELLRG KAHTGKKGWI VRFDGVDSLD EARQIVGSAV LVKTEDRPEL EEDEIYSLDL VGMSVIVKDT
201: GKLVGTVAQV FNFGGGDLLQ VMVGSAENAV QTDSENQDST PSRQHVWIPF AEDIVPDIDM ESREMWITPP KGLLEVNTRP EKSKKERRAM DWKEKKKLQR
301: RITAAKKVLH EMEQGHILEG LLSGDKLEKA SLAEQIASID FQLFKHAMHS VSKQVDSMSK NVLANSSSRK NVMRIPRETL MNHGEKGKNV FSTEFSKGRE
401: ILQKSKAAIV LVTNGSDSDI VDAEFQRLLN SFSELMKVEE NHISPPFVII SPDNHVDSVR NYLVENDYFG FDTQKVWVLE EMKLPVVSLS SELESKKILL
501: KSPWEILQRP AGTGAIFSSL SSNKILESFN AMGIEYVQIC SLSNELVLGH PLLFGAASSR SVDVGVKLRK TSGKTEDGFD LILSIDHLNK MCRDVAKARF
601: SAHPEQHEHV EHVDGQWVTV QPEAANSHRL STDVTSVLDS CSPDKLCVME IVE
101: VLVSPRTDFP ELRFATPGKR WLRARAAGKM QVRELELLRG KAHTGKKGWI VRFDGVDSLD EARQIVGSAV LVKTEDRPEL EEDEIYSLDL VGMSVIVKDT
201: GKLVGTVAQV FNFGGGDLLQ VMVGSAENAV QTDSENQDST PSRQHVWIPF AEDIVPDIDM ESREMWITPP KGLLEVNTRP EKSKKERRAM DWKEKKKLQR
301: RITAAKKVLH EMEQGHILEG LLSGDKLEKA SLAEQIASID FQLFKHAMHS VSKQVDSMSK NVLANSSSRK NVMRIPRETL MNHGEKGKNV FSTEFSKGRE
401: ILQKSKAAIV LVTNGSDSDI VDAEFQRLLN SFSELMKVEE NHISPPFVII SPDNHVDSVR NYLVENDYFG FDTQKVWVLE EMKLPVVSLS SELESKKILL
501: KSPWEILQRP AGTGAIFSSL SSNKILESFN AMGIEYVQIC SLSNELVLGH PLLFGAASSR SVDVGVKLRK TSGKTEDGFD LILSIDHLNK MCRDVAKARF
601: SAHPEQHEHV EHVDGQWVTV QPEAANSHRL STDVTSVLDS CSPDKLCVME IVE
001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV
Arabidopsis Description
16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.