Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18691 | Sorghum | plastid | 90.68 | 90.95 |
| Zm00001d051090_P001 | Maize | cytosol | 6.62 | 70.97 |
| Zm00001d010278_P001 | Maize | nucleus | 27.52 | 69.85 |
| Os05t0566300-01 | Rice | plastid | 31.88 | 69.74 |
| TraesCS1B01G431200.1 | Wheat | cytosol | 54.44 | 69.08 |
| TraesCS1D01G409700.1 | Wheat | plastid | 66.17 | 67.38 |
| TraesCS1A01G402100.1 | Wheat | plastid | 65.26 | 66.16 |
| HORVU1Hr1G088590.2 | Barley | plastid | 64.21 | 63.26 |
| Zm00001d022423_P002 | Maize | plastid | 19.4 | 50.19 |
| GSMUA_Achr8P27110_001 | Banana | plastid | 44.51 | 43.27 |
| VIT_10s0003g02660.t01 | Wine grape | plastid | 39.7 | 39.7 |
| PGSC0003DMT400007946 | Potato | plastid | 37.29 | 38.45 |
| Solyc02g071280.2.1 | Tomato | plastid | 36.99 | 37.61 |
| KRH42952 | Soybean | plastid | 35.49 | 35.98 |
| KRH59080 | Soybean | plastid | 36.39 | 35.64 |
| CDY33475 | Canola | plastid | 35.04 | 35.46 |
| CDX77660 | Canola | plastid | 34.59 | 35.28 |
| AT5G46420.1 | Thale cress | plastid | 34.59 | 35.22 |
| Bra025017.1-P | Field mustard | plastid | 34.44 | 19.93 |
Protein Annotations
| EntrezGene:100501868 | InterPro:16S_RimM | Gene3D:2.30.30.240 | Gene3D:2.40.30.60 | Gene3D:3.90.550.10 | MapMan:35.2 |
| UniProt:A0A1D6MCY5 | ProteinID:AQK88544.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0043022 | InterPro:IPR029044 | InterPro:IPR036976 | HAMAP:MF_00014 |
| InterPro:Nucleotide-diphossugar_trans | PFAM:PF01782 | PFAM:PF05239 | InterPro:PRC-brl_dom | InterPro:PRC_barrel-like_sf | PANTHER:PTHR11952 |
| PANTHER:PTHR11952:SF10 | InterPro:RimM_N | InterPro:RimM_N_sf | SUPFAM:SSF50346 | SUPFAM:SSF50447 | SUPFAM:SSF53448 |
| TIGRFAMs:TIGR02273 | InterPro:Transl_B-barrel_sf | UniParc:UPI0008441DCF | EnsemblPlantsGene:Zm00001d039036 | EnsemblPlants:Zm00001d039036_P003 | EnsemblPlants:Zm00001d039036_T003 |
| SEG:seg | : | : | : | : | : |
Description
16S rRNA processing protein RimM family
Coordinates
chr6:+:168999800..169005010
Molecular Weight (calculated)
73723.9 Da
IEP (calculated)
5.575
GRAVY (calculated)
-0.304
Length
665 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPTSASAR PLSLPLTVPL SCHRSHLLPA PNARLLTRRR VALAPTRPGA TLLSSLSDAR EEEEDESGFY EEDEQQEFED EEEQGYDGEN EELVEVGYVS
101: GAHGVRGDVL VTPRTDFPEL RLATPGTRWL RARAAGKQQV REFELVRGRA HTGKKSWIVS FDGVNNLDEA RQIVGSAVLV KARDRPEIED DEFYSLDLVG
201: MRVIVKDTGK LVGTVGQVFN FGGGDLLQVI MGSSEGTAVD PDSENQDSIS SREHVWIPFA EDIVPDVDMA SREMRITPPK GLLELNSRSD KRSKKERRAM
301: EWKDRKRFQR RVIAGKKVLS EMDQVHVLEG LVSGDKVQKA SLAEQIGSID FQLFRHAVHC VSKQIESSSM NLLANSSLSR KKVIKIPYKT LINLGDKAEH
401: AFSTEFKNGL DILLKSKAAI VLVRNGSDSD TEFLSLLNSF SELMKVVENK VSPPLIVIAP AGHVESVRKC LVENDYFGFD TQKNHSQVWV LEEVELPVVS
501: ICSEGNRKKV LMKSPWEIIK KPTGSGAIFS LLLSNKILET LNEMGVQYTQ ICSSSNKPII GHPLLFGAVA SRGADVGIQV SKTGETLDDF DVILSIDQLN
601: KMCRDVTQIR FSARSEQNVH VEHVDGQWVA VQPEVANSHR LHAEVTSVLD SCAPDKLCVM EIVEQ
101: GAHGVRGDVL VTPRTDFPEL RLATPGTRWL RARAAGKQQV REFELVRGRA HTGKKSWIVS FDGVNNLDEA RQIVGSAVLV KARDRPEIED DEFYSLDLVG
201: MRVIVKDTGK LVGTVGQVFN FGGGDLLQVI MGSSEGTAVD PDSENQDSIS SREHVWIPFA EDIVPDVDMA SREMRITPPK GLLELNSRSD KRSKKERRAM
301: EWKDRKRFQR RVIAGKKVLS EMDQVHVLEG LVSGDKVQKA SLAEQIGSID FQLFRHAVHC VSKQIESSSM NLLANSSLSR KKVIKIPYKT LINLGDKAEH
401: AFSTEFKNGL DILLKSKAAI VLVRNGSDSD TEFLSLLNSF SELMKVVENK VSPPLIVIAP AGHVESVRKC LVENDYFGFD TQKNHSQVWV LEEVELPVVS
501: ICSEGNRKKV LMKSPWEIIK KPTGSGAIFS LLLSNKILET LNEMGVQYTQ ICSSSNKPII GHPLLFGAVA SRGADVGIQV SKTGETLDDF DVILSIDQLN
601: KMCRDVTQIR FSARSEQNVH VEHVDGQWVA VQPEVANSHR LHAEVTSVLD SCAPDKLCVM EIVEQ
001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV
Arabidopsis Description
16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.