Factsheet for PGSC0003DMT400007946

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46420.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT5G46420.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT5G46420.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT5G46420.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT5G46420.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT5G46420.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT5G46420.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g071280.2.1	Tomato	plastid	96.28	94.95
VIT_10s0003g02660.t01	Wine grape	plastid	55.04	53.38
Zm00001d051090_P001	Maize	cytosol	4.96	51.61
KRH42952	Soybean	plastid	49.77	48.93
CDX77660	Canola	plastid	48.53	48.01
KRH59080	Soybean	plastid	49.92	47.42
CDY33475	Canola	plastid	48.22	47.34
AT5G46420.1	Thale cress	plastid	47.6	47.01
GSMUA_Achr8P27110_001	Banana	plastid	44.19	41.67
TraesCS1B01G431200.1	Wheat	cytosol	33.02	40.65
Os05t0566300-01	Rice	plastid	18.91	40.13
Zm00001d010278_P001	Maize	nucleus	15.97	39.31
EES18691	Sorghum	plastid	38.6	37.56
TraesCS1D01G409700.1	Wheat	plastid	37.98	37.52
TraesCS1A01G402100.1	Wheat	plastid	37.98	37.35
Zm00001d039036_P003	Maize	plastid	38.45	37.29
HORVU1Hr1G088590.2	Barley	plastid	38.76	37.04
Zm00001d022423_P002	Maize	plastid	10.85	27.24
Bra025017.1-P	Field mustard	plastid	47.29	26.54

Protein Annotations

EntrezGene:102604214	InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.90.550.10	MapMan:35.2
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0043022	InterPro:IPR029044	InterPro:IPR036976
UniProt:M0ZTT0	HAMAP:MF_00014	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01782	PFAM:PF05239	EnsemblPlantsGene:PGSC0003DMG400003073
PGSC:PGSC0003DMG400003073	EnsemblPlants:PGSC0003DMT400007946	InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf	PANTHER:PTHR11952	PANTHER:PTHR11952:SF10
InterPro:RimM_N	InterPro:RimM_N_sf	SUPFAM:SSF50346	SUPFAM:SSF50447	SUPFAM:SSF53448	TIGRFAMs:TIGR02273
InterPro:Transl_B-barrel_sf	UniParc:UPI0002967B35	RefSeq:XP_006355633.1	SEG:seg	:	:

Description

16S rRNA processing protein RimM family [Source:PGSC_GENE;Acc:PGSC0003DMG400003073]

Coordinates

chr2:+:30501190..30511178

Molecular Weight (calculated)

73295.2 Da

IEP (calculated)

6.631

GRAVY (calculated)

-0.273

Length

645 amino acids

Sequence
(BLAST)

001: MQGSSALSCS SNSISAPVGL CCSQRLTLPF RNQRIGFLEN PSSLKIFHFH RNTTFPLLNC TATEEIVEAS ETEGLFVETG YIYSVHGLQG EVRVKATTDF
101: PELRFSQPGR RWLRQQVTGR DMIQEIELVE GRGHPGQKSW ILKFHEISTI EQAQKLVGSA LLVKDEDRPI LEEGEFYTPD LVGMKVFLKE TRELVGTVIN
201: VFNSGASDLL HVELLPDRNA RPQLEGSASG PLVWVPFVEA IVPNIDLSKR EMLITPPKGL LELNIRADER SKKERRQLEW KERKKSQKRL IAAKKILHEM
301: EQDHIFHGFR YGEKNQRSFL ANQIVDVNSI LLQHALQNKK IPYKRWSFPD FVNALQVNNT LKLSKEFFSK ENVEHSSIGS KVQEQGHCLI SSGKVAIVLA
401: LTESKPAGPH EEIAYLHVKA LLNDSHRLLK MEDRPSVPLI VVCPAESIEY LKQLFMDHDY FSFDSEKVWF LEEEKLPVVS ASQEEENKHK ILMKSPWEIL
501: QRPAGSAGIV TLLSSQNLLE HLHVMGVEYI QVCSGNQEFI NGEMLLGFTK SREANAGIQV FRDAGYLEEH FNIVFSIDFA KKLTKKIDKL QFEAILKPNQ
601: YVEMVEKEWV DVIPSSPNSY EFHSSIYSCL NACPPSKVCL VDIIA

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.