CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33475	Canola	plastid	94.33	93.61
AT5G46420.1	Thale cress	plastid	84.51	84.38
Bra025017.1-P	Field mustard	plastid	92.48	52.48
VIT_10s0003g02660.t01	Wine grape	plastid	50.61	49.62
PGSC0003DMT400007946	Potato	plastid	48.01	48.53
Solyc02g071280.2.1	Tomato	plastid	47.7	47.55
Zm00001d051090_P001	Maize	cytosol	4.45	46.77
KRH42952	Soybean	plastid	45.09	44.82
KRH59080	Soybean	plastid	45.55	43.74
GSMUA_Achr8P27110_001	Banana	plastid	41.56	39.62
TraesCS1B01G431200.1	Wheat	cytosol	30.98	38.55
Os05t0566300-01	Rice	plastid	17.18	36.84
Zm00001d010278_P001	Maize	nucleus	14.72	36.64
TraesCS1A01G402100.1	Wheat	plastid	35.58	35.37
EES18691	Sorghum	plastid	35.43	34.84
TraesCS1D01G409700.1	Wheat	plastid	34.82	34.76
Zm00001d039036_P003	Maize	plastid	35.28	34.59
HORVU1Hr1G088590.2	Barley	plastid	35.74	34.52
Zm00001d022423_P002	Maize	plastid	10.74	27.24

Protein Annotations

InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.90.550.10	MapMan:35.2	GO:A0A078CL92
EnsemblPlants:CDX77660	ProteinID:CDX77660	ProteinID:CDX77660.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0043022
GO:GO:0070569	EnsemblPlantsGene:GSBRNA2T00128613001	InterPro:IPR029044	InterPro:IPR036976	HAMAP:MF_00014	InterPro:Nucleotide-diphossugar_trans
PFAM:PF01704	PFAM:PF01782	PFAM:PF05239	InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf	PANTHER:PTHR11952
PANTHER:PTHR11952:SF10	InterPro:RimM_N	InterPro:RimM_N_sf	SUPFAM:SSF50346	SUPFAM:SSF50447	SUPFAM:SSF53448
TIGRFAMs:TIGR02273	InterPro:Transl_B-barrel_sf	InterPro:UDPGP_fam	UniParc:UPI0004EF218A	:	:

Description

BnaC07g19140D

Coordinates

chrLK031812:+:625520..628557

Molecular Weight (calculated)

73175.5 Da

IEP (calculated)

5.070

GRAVY (calculated)

-0.315

Length

652 amino acids

Sequence
(BLAST)

001: MLRACALLCS STPITFPPVQ LFNPNNTSLH FQTFELSRPV SASTRAPCHF SLVGAGGRCS FTVRSTATEE AVETSSDSKL DLVEVGFLSG VHGLQGEICI
101: KPNTDFPDLR FSKPGRRWLK QQLMGQDKID EVELVEGRPH PAQKSWILKF RGLDDVDQVR QLVGATLLAE EDDRPELDEG EFYSRDLLGV KVLLKETGQL
201: VGTVANVFDN GGNDLLHVLL DSSMEACNGS AKTNQLVWIP FVDAIVPDVD LERREMYITP PKGLLEVNMR ADELSKKERR QLEWKERKKQ QKRLIAAKKK
301: LCELEQKHVF DGLRFGEKSQ RSLLADHILD VNSTLLQKAL QSIEDSSKKR WNVTEELNAL RARESECTVN VSRECLGFDA SEEKVGDNFS FLQQGQSLYS
401: EGKVSICLVL NDHGTEQLEG ESGAVSYLQT LLDDEQRFLK EDERACVPLI VVSPEHAIED LRNLFQENDY FGFESEKVWF LKEETLPVVC SSPEEPKKHK
501: ILMKSPWEIL KSPVGSGGVL SVLASHGITD SLSSLGIDYL QVHSIETRSH HINRMLVGFV SAKGAEIGIQ VTEESEVKNL EMIFTLKFLK RLKGKIEFEA
601: VMKMNSHVQM VEKEWVESVP TEPNSSEFRS DIYGVLGECS SPAKICLMNI TV

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.