Factsheet for TraesCS1B01G431200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G409700.1	Wheat	plastid	95.8	76.88
TraesCS1A01G402100.1	Wheat	plastid	94.08	75.15
HORVU1Hr1G088590.2	Barley	plastid	93.13	72.3
EES18691	Sorghum	plastid	70.23	55.51
Zm00001d051090_P001	Maize	cytosol	6.49	54.84
Zm00001d039036_P003	Maize	plastid	69.08	54.44
Zm00001d010278_P001	Maize	nucleus	24.24	48.47
Os05t0566300-01	Rice	plastid	25.0	43.09
GSMUA_Achr8P27110_001	Banana	plastid	47.52	36.4
Zm00001d022423_P002	Maize	plastid	17.37	35.41
VIT_10s0003g02660.t01	Wine grape	plastid	42.37	33.38
PGSC0003DMT400007946	Potato	plastid	40.65	33.02
KRH42952	Soybean	plastid	41.22	32.93
Solyc02g071280.2.1	Tomato	plastid	40.08	32.11
KRH59080	Soybean	plastid	41.03	31.66
CDY33475	Canola	plastid	38.93	31.05
CDX77660	Canola	plastid	38.55	30.98
AT5G46420.1	Thale cress	plastid	37.98	30.47
Bra025017.1-P	Field mustard	plastid	38.36	17.49

Protein Annotations

InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.90.550.10	MapMan:35.2	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0043022	GO:GO:0070569
InterPro:IPR029044	InterPro:IPR036976	HAMAP:MF_00014	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01704	PFAM:PF01782
PFAM:PF05239	InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf	PANTHER:PTHR11952	PANTHER:PTHR11952:SF10	InterPro:RimM_N
InterPro:RimM_N_sf	SUPFAM:SSF50346	SUPFAM:SSF53448	TIGRFAMs:TIGR02273	EnsemblPlantsGene:TraesCS1B01G431200	EnsemblPlants:TraesCS1B01G431200.1
InterPro:UDPGP_fam	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:655760026..655764727

Molecular Weight (calculated)

58621.3 Da

IEP (calculated)

5.995

GRAVY (calculated)

-0.328

Length

524 amino acids

Sequence
(BLAST)

001: MQVREFELVR GKAHTGKKGW IVRFDGVDSL DEARQIVGSA VLVKTEDRPE LEEDEIYSLD LVGMSVIVKD TGKLVGTVAQ VFNFGGGDLL QVMVGSAENA
101: VQTNSENPDS TPSRQHVWIP FAEDIVPDID MESREMWITP PKGLLEVNTR PEKSKKERRA MDWKEKKKLQ RRITAAKKVL HEMEQGHILE GLLSGDKLEK
201: ASLAEQIAGI DFQLFKHAMH SVSKQVDSMS KNVLAKSSLR KNVMRIPRET LMNHGEKGKN VFSDEFSKGR EILQKSKAAI VLITNGSDSD IVDAEFQRLL
301: NSFSELMKVE ENHISPPFII ISPDNHVDSV RNYLVENDYF GFDNQKVWVL EEMKLPVVSL SSELMSKKIL LKSPWEILQR PAGTGAIFSS LSSNKILESF
401: NATGIEYVQI CSLSDELVLG HPLLFGAASS RGVDVGIKLR KTSDKTENGF DLILSIDHLN KMCRDVAKAR FSAHPEQHEH VEHVDGQWVA VQPEAPNSHR
501: LSTDVTSVLD SCSPDKLCVM QIVE

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.