CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039036_P003	Maize	plastid	90.95	90.68
Zm00001d051090_P001	Maize	cytosol	6.64	70.97
Os05t0566300-01	Rice	plastid	32.28	70.39
TraesCS1B01G431200.1	Wheat	cytosol	55.51	70.23
TraesCS1D01G409700.1	Wheat	plastid	67.27	68.3
Zm00001d010278_P001	Maize	nucleus	26.7	67.56
TraesCS1A01G402100.1	Wheat	plastid	66.52	67.23
HORVU1Hr1G088590.2	Barley	plastid	64.86	63.7
Zm00001d022423_P002	Maize	plastid	18.85	48.64
GSMUA_Achr8P27110_001	Banana	plastid	45.25	43.86
VIT_10s0003g02660.t01	Wine grape	plastid	40.27	40.15
PGSC0003DMT400007946	Potato	plastid	37.56	38.6
Solyc02g071280.2.1	Tomato	plastid	37.25	37.77
KRH42952	Soybean	plastid	36.35	36.74
KRH59080	Soybean	plastid	36.8	35.94
AT5G46420.1	Thale cress	plastid	35.29	35.83
CDY33475	Canola	plastid	35.44	35.77
CDX77660	Canola	plastid	34.84	35.43
Bra025017.1-P	Field mustard	plastid	34.84	20.1

Protein Annotations

InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.90.550.10	MapMan:35.2	EntrezGene:8074605
UniProt:C5YVW0	EnsemblPlants:EES18691	ProteinID:EES18691	ProteinID:EES18691.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0003977	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006048	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0043022	InterPro:IPR029044	InterPro:IPR036976	HAMAP:MF_00014	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01782
PFAM:PF05239	InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf	PANTHER:PTHR11952	PANTHER:PTHR11952:SF10	InterPro:RimM_N
InterPro:RimM_N_sf	EnsemblPlantsGene:SORBI_3009G234200	SUPFAM:SSF50346	SUPFAM:SSF50447	SUPFAM:SSF53448	TIGRFAMs:TIGR02273
InterPro:Transl_B-barrel_sf	UniParc:UPI0001A88E4B	RefSeq:XP_002440261.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:57352632..57357782

Molecular Weight (calculated)

73363.3 Da

IEP (calculated)

4.983

GRAVY (calculated)

-0.301

Length

663 amino acids

Sequence
(BLAST)

001: MAPPASASAR PLSLPLTVPL SRYRSHVLPA TCSRLLPRRR VALAPARPGA AVLSSLSDAR EEEGEEEEEG DFYEEDEQQE YDDEEEQGYD GENEELVEVG
101: YVSGAHGVRG DVLVTPRTDF PELRLATPGT RWLRARAAGK QQVREFELVR GRAHTGKKSW IVSFDGIDNL DEARQIVGSA VLVKAGDRPE IEDDEFYSLD
201: LVGMRVIVKD TGKVVGTVGQ IFNFGGGDLL QVMIGSAEGT AVDPDSENQD SISSREHVWI PFAEDIVPDV DMASREMWIT PPKGLLELNS RSDKRSKKER
301: RAMEWKDRKR LQRRVIAGKK VLSEMDQVHV LEGLVSGNKV QKASLAEQIG SIDFQLFRHA VHCVSKQIES SSKILLANSS LSRKKVIKIP YKTLINLEDK
401: AEHAFSSEFK NGLEILLKSK AAIVLVRNGS DSDAEFLGLL NSFSELMKVV ENQVSPPFII VSPAGHVESV RNCLVENDYF GLDTEKVWVL EELELPVVSI
501: SSEGNRKKVL MKSPWEIIKR PAGSGGIFSL LASNKILETL NEMGVQYTQI CSSSNKPLIG HPMLFGAVAS RGADVGIQLS KTSETENDFD VILSIDQLNK
601: MCRDVTQVRF SARSEENVHV EHVDGQWVAV QPEVANSHRL HAEVTSVLNS CAPDKLCVME IVE

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.