CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77660	Canola	plastid	93.61	94.33
AT5G46420.1	Thale cress	plastid	84.47	84.99
Bra025017.1-P	Field mustard	plastid	94.83	54.22
VIT_10s0003g02660.t01	Wine grape	plastid	51.14	50.53
Zm00001d051090_P001	Maize	cytosol	4.57	48.39
PGSC0003DMT400007946	Potato	plastid	47.34	48.22
Solyc02g071280.2.1	Tomato	plastid	47.03	47.25
KRH42952	Soybean	plastid	44.29	44.36
KRH59080	Soybean	plastid	45.51	44.04
GSMUA_Achr8P27110_001	Banana	plastid	41.55	39.91
TraesCS1B01G431200.1	Wheat	cytosol	31.05	38.93
Zm00001d010278_P001	Maize	nucleus	15.22	38.17
Os05t0566300-01	Rice	plastid	17.2	37.17
TraesCS1A01G402100.1	Wheat	plastid	35.62	35.67
EES18691	Sorghum	plastid	35.77	35.44
TraesCS1D01G409700.1	Wheat	plastid	34.86	35.07
Zm00001d039036_P003	Maize	plastid	35.46	35.04
HORVU1Hr1G088590.2	Barley	plastid	35.77	34.81
Zm00001d022423_P002	Maize	plastid	10.96	28.02

Protein Annotations

InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.90.550.10	MapMan:35.2	GO:A0A078H4C2
UniProt:A0A078H4C2	EnsemblPlants:CDY33475	ProteinID:CDY33475	ProteinID:CDY33475.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0043022	EnsemblPlantsGene:GSBRNA2T00054718001
InterPro:IPR029044	InterPro:IPR036976	HAMAP:MF_00014	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01782	PFAM:PF05239
InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf	PANTHER:PTHR11952	PANTHER:PTHR11952:SF10	InterPro:RimM_N	InterPro:RimM_N_sf
SUPFAM:SSF50346	SUPFAM:SSF50447	SUPFAM:SSF53448	TIGRFAMs:TIGR02273	InterPro:Transl_B-barrel_sf	UniParc:UPI0004EE12EA

Description

BnaA06g35980DBnaA06g35980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4C2]

Coordinates

chrLK032315:+:126989..129946

Molecular Weight (calculated)

73962.6 Da

IEP (calculated)

5.319

GRAVY (calculated)

-0.330

Length

657 amino acids

Sequence
(BLAST)

001: MLRACALLCS STPITFPPVQ LFNPNNTSLH FQTFELSRPV SASTRAPCHF SLVGAGGRCS SFTVRSTATE EVIETSSDSK LDLVEVGFLS GVHGLQGEIC
101: IKPNTDFPDL RFSKPGRRWL KQQLMGQDKI DEVELVEGRP HPAQKSWILK FRGLDDVDQV RQLVGATLLA EEDDRPELDD GEFYSRDLLG MRVLLKETGQ
201: LVGTVANVFD NGGNDLLHVL LDSSMEACNG STKTNQLVWI PFVDAIVPDV DLERREMYIT PPKGLLEVNM RADERSKKER RQLEWKERKK QQKRLIAAKK
301: KLCELEQKHV FDGLRFGEKS QRSLLADHIL DVNSTLLQKA LQSIENSSKK RWNVTEEINT LRARESDCTL NVSRECLGFD ASKEKLGDNF SFLQQGKSLF
401: SEGKVAICLV LNDHKTEQLE GESGAVSYVQ TLLDDEQRFL KEEERACVPL IIVSPEHAIE DLRNLFQEND YFGFESDKVW FIKEETLPVV CSSPEEPKKH
501: KILMKSPWEI LKSPVGSGGV LSVLASHGIT DSLSSLGIDF LQVHSIETRS QSPQHYINPM LVGFVSAKGA EIGIQVTEES EVKNMEMTFT LKFLKRLKGK
601: IEFEAVMKMN SHVQMVEKEW VESVPTEPNS FEFRSDICSV LSECSSPAKI CLMNITV

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.