CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46420.1	KRH10294	AT3G46090.1	17259181
AT5G46420.1	KRH23029	AT3G46090.1	17259181
AT5G46420.1	KRH24840	AT3G46090.1	17259181
AT5G46420.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59080	Soybean	plastid	83.69	80.85
Zm00001d051090_P001	Maize	cytosol	5.18	54.84
VIT_10s0003g02660.t01	Wine grape	plastid	54.88	54.14
PGSC0003DMT400007946	Potato	plastid	48.93	49.77
Solyc02g071280.2.1	Tomato	plastid	48.02	48.17
CDX77660	Canola	plastid	44.82	45.09
CDY33475	Canola	plastid	44.36	44.29
AT5G46420.1	Thale cress	plastid	43.9	44.1
GSMUA_Achr8P27110_001	Banana	plastid	45.88	44.01
TraesCS1B01G431200.1	Wheat	cytosol	32.93	41.22
Os05t0566300-01	Rice	plastid	18.29	39.47
TraesCS1A01G402100.1	Wheat	plastid	37.8	37.8
TraesCS1D01G409700.1	Wheat	plastid	37.35	37.52
HORVU1Hr1G088590.2	Barley	plastid	38.11	37.04
Zm00001d010278_P001	Maize	nucleus	14.63	36.64
EES18691	Sorghum	plastid	36.74	36.35
Zm00001d039036_P003	Maize	plastid	35.98	35.49
Zm00001d022423_P002	Maize	plastid	11.28	28.79
Bra025017.1-P	Field mustard	plastid	44.05	25.15

Protein Annotations

EntrezGene:100800702	InterPro:16S_RimM	Gene3D:2.30.30.240	Gene3D:2.40.30.60	Gene3D:3.90.550.10	MapMan:35.2
EMBL:ACUP02004841	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G121900	GO:GO:0003674	GO:GO:0003824	GO:GO:0003977
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006048	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0043022	GO:GO:0070569	UniProt:I1KSK3
InterPro:IPR029044	InterPro:IPR036976	EnsemblPlants:KRH42952	ProteinID:KRH42952	ProteinID:KRH42952.1	HAMAP:MF_00014
InterPro:Nucleotide-diphossugar_trans	PFAM:PF01704	PFAM:PF01782	PFAM:PF05239	InterPro:PRC-brl_dom	InterPro:PRC_barrel-like_sf
PANTHER:PTHR11952	PANTHER:PTHR11952:SF10	InterPro:RimM_N	InterPro:RimM_N_sf	SUPFAM:SSF50346	SUPFAM:SSF50447
SUPFAM:SSF53448	TIGRFAMs:TIGR02273	InterPro:Transl_B-barrel_sf	InterPro:UDPGP_fam	UniParc:UPI0002964FF7	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:9389037..9395446

Molecular Weight (calculated)

74236.3 Da

IEP (calculated)

7.041

GRAVY (calculated)

-0.323

Length

656 amino acids

Sequence
(BLAST)

001: MQIEALPPAL QRPFQPPLSL GFPFKPSFLT PATHAPSHFN TYSRFQHSVK FRRSFATVTA TTEKVVIDDS DTTNDEPGFV NIGYISSVHG IQGEIRVKPA
101: TDFPQLRFST PGRRWLKSKV LGRESVQEVE LEEGREHPAL KSWILKFRGI DTVDQAKKLI GATLLVVDED RPELEEGEFY THDLIGMKVF MKENGKLVGT
201: VMNVFNSGAN DLLQIVLDSS FDMLDKSGKS RSAEIDASDQ LVLVPFVEAI VPDVDMKRRQ MHITPPKGLL ELNLRFDDRS KKERRQLEWK EKKKFQKRLI
301: AAKKKLIEME QKHIFHGFQY GEKDQWSSLS DQIVGVNSKL LQEALQSLER PAKRWKVAEL VGAIEAKLIN SIQISEEYFL NGGKNKLFRD MQEKGLELMS
401: KGKMAIVFLL NDKEHQGSIS DSNKVENEAI DTSVLHMFQK VKDHVSVPLI LVSSAQQIQS FRNLFTSNNY FAFDSEKVWF LEEEKLPVIS SLPKGQNKYK
501: ILMKSPWEIL QSPVGSGGLI SLFSNHSIAD NLIDMGVEYI EVCCTSEKMA GGNSLLLGLI NSREAKIGIQ ISPKITDSEE NFDLIFSMDF VKKLTKQSNK
601: LQFDAIPKAH SFVEKVDKEW VTLTSSTPNS YELSCSIYSS LNACSLDKVC IVEVRE

Best Arabidopsis Sequence Match ( AT5G46420.1 )
(BLAST)

001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Arabidopsis Description

16S rRNA processing protein RimM family [Source:UniProtKB/TrEMBL;Acc:Q9FHG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.