Factsheet for Solyc07g064160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54770.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT5G54770.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049574	Potato	plastid	95.2	94.4
CDY41008	Canola	peroxisome	69.21	87.5
GSMUA_Achr7P00180_001	Banana	cytosol	22.32	84.04
VIT_19s0177g00140.t01	Wine grape	plastid	79.94	80.17
KRH55656	Soybean	plastid	76.84	78.84
KRH25861	Soybean	plastid	77.68	78.57
CDY28754	Canola	plastid	76.55	77.65
CDY52570	Canola	plastid	77.12	77.56
CDY43024	Canola	plastid	76.84	77.49
AT5G54770.1	Thale cress	plastid	76.27	77.36
Bra022742.1-P	Field mustard	plastid	76.27	77.36
Bra002957.1-P	Field mustard	plastid	76.55	76.99
CDY47441	Canola	plastid	76.55	76.99
Bra029007.1-P	Field mustard	plastid	76.27	76.92
EES03134	Sorghum	plastid	76.27	76.27
Zm00001d011183_P001	Maize	plastid	75.71	75.71
TraesCS7A01G376800.1	Wheat	plastid	74.58	75.21
TraesCS7B01G278200.1	Wheat	plastid	74.58	75.21
TraesCS7D01G373100.2	Wheat	plastid, unclear	74.58	75.21
EER99743	Sorghum	plastid	74.29	74.72
Zm00001d044228_P001	Maize	plastid	74.29	74.08
CDY42479	Canola	plastid	53.95	74.03
Os07t0529600-01	Rice	plastid	74.01	73.8
GSMUA_Achr2P14040_001	Banana	plastid	43.5	66.96
TraesCS3B01G435500.1	Wheat	plastid	62.15	65.09
HORVU7Hr1G090100.3	Barley	cytosol	64.97	61.99
HORVU3Hr1G090190.1	Barley	plastid	61.02	60.67

Protein Annotations

Gene3D:3.50.50.60	MapMan:7.2.2.1	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009228	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0046872	GO:GO:0052837	InterPro:IPR036188	UniProt:K4CH99
HAMAP:MF_03158	PFAM:PF01946	PRINTS:PR00419	PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	SUPFAM:SSF51905
EnsemblPlantsGene:Solyc07g064160.2	EnsemblPlants:Solyc07g064160.2.1	InterPro:Sti35	TIGRFAMs:TIGR00292	InterPro:Thi4_fam	UniParc:UPI000276C41B
SEG:seg	:	:	:	:	:

Description

Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4CH99]

Coordinates

chr7:+:66420626..66422802

Molecular Weight (calculated)

37532.4 Da

IEP (calculated)

5.379

GRAVY (calculated)

0.126

Length

354 amino acids

Sequence
(BLAST)

001: MASTLASSVI SKTNFIDTHK SSFYGVPISS QTRLKIVKST PQNMSVSMSA DASPPYDLGS FSFNPIKESI VAREMTRRYM TDMITYADTD VVIVGAGSAG
101: LSCAYELSKN PNVQVAILEQ SVSPGGGAWL GGQLFSAMVV RKPAHLFLNE LGIDYDEQDN YVVIKHAALF TSTIMSKLLA RPNVKLFNAV ATEDLIVKNG
201: RVGGVVTNWS LVSQNHDTQS CMDPNVMEAK IVVSSCGHDG PMGATGVKRL RSIGMINSVP GMKALDMNAA EDAIVRLTRE VVPGMIVTGM EVAEIDGAPR
301: MGPTFGAMMI SGQKAAHLAL RALGLPNALD GTAETSVLPE LMLAAADEAE IADA

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.