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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra002957.1-P Field mustard plastid 99.22 72.73
CDY47441 Canola plastid 98.45 72.16
CDY52570 Canola plastid 96.12 70.45
CDY43024 Canola plastid 95.74 70.37
CDY28754 Canola plastid 94.57 69.91
AT5G54770.1 Thale cress plastid 91.09 67.34
CDY41008 Canola peroxisome 71.32 65.71
VIT_10s0116g00530.t01 Wine grape plastid 76.74 55.77
VIT_19s0177g00140.t01 Wine grape plastid 75.19 54.96
Os07t0529600-01 Rice plastid 74.81 54.37
Solyc07g064160.2.1 Tomato plastid 74.03 53.95
TraesCS7D01G373100.2 Wheat plastid, unclear 72.48 53.28
TraesCS7B01G278200.1 Wheat plastid 72.09 52.99
TraesCS7A01G376800.1 Wheat plastid 72.09 52.99
EER99743 Sorghum plastid 71.71 52.56
EES03134 Sorghum plastid 71.71 52.26
PGSC0003DMT400049574 Potato plastid 72.09 52.1
Zm00001d011183_P001 Maize plastid 71.32 51.98
Zm00001d044228_P001 Maize plastid 70.54 51.27
TraesCS3B01G435500.1 Wheat plastid 60.47 46.15
HORVU3Hr1G090190.1 Barley plastid 59.69 43.26
KRH65723 Soybean cytosol 37.21 42.48
HORVU7Hr1G090100.3 Barley cytosol 58.53 40.7
GSMUA_Achr2P14040_001 Banana plastid 26.74 30.0
GSMUA_Achr7P00180_001 Banana cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:CDY42479EnsemblPlantsGene:GSBRNA2T00074907001Gene3D:3.50.50.60GO:A0A078HYS6InterPro:FAD/NAD-bd_sfInterPro:IPR036188
InterPro:Thi4_famPANTHER:PTHR43422PANTHER:PTHR43422:SF3PFAM:PF01946ProteinID:CDY42479ProteinID:CDY42479.1
SEG:segSUPFAM:SSF51905TIGRFAMs:TIGR00292UniParc:UPI0004EF46C2UniProt:A0A078HYS6MapMan:7.2.2.1
Description
BnaA10g08550DBnaA10g08550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYS6]
Coordinates
chrLK032525:+:235045..236517
Molecular Weight (calculated)
27429.1 Da
IEP (calculated)
7.597
GRAVY (calculated)
0.174
Length
258 amino acids
Sequence
(BLAST)
001: MAAMTSTLSI SSTKPQRLFD SSFHGSSISA APVSVGLKPR SVSAVSVRAS TAGYDLNAFT FAPIKESIVS REMTRRYMTD MITYAETDVV VVGAGSAGLS
101: CAYEISKNPN VQVAIIEQSV SPGGGAWLGG QLFSAMIVRK PAHLFLDEIG VPYDEQDNYV VIKHAALFTS TIMSKLLARP NVKLFNAVAA EDLIVKGNRV
201: GGVVTNWALV SMNHDTQSCM DPNVMEAKIV VSSCGHDGPF GATGVKRLKS IGLIDHID
Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)
001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA
Arabidopsis Description
THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.