Factsheet for Zm00001d044228_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03134	Sorghum	plastid	90.7	90.96
Zm00001d011183_P001	Maize	plastid	89.3	89.55
GSMUA_Achr7P00180_001	Banana	cytosol	22.54	85.11
CDY41008	Canola	peroxisome	65.63	83.21
Os07t0529600-01	Rice	plastid	80.56	80.56
TraesCS7D01G373100.2	Wheat	plastid, unclear	78.59	79.49
TraesCS7B01G278200.1	Wheat	plastid	78.59	79.49
TraesCS7A01G376800.1	Wheat	plastid	78.59	79.49
KRG91236	Soybean	plastid	76.34	77.21
KRH35585	Soybean	plastid	76.06	76.92
CDY43024	Canola	plastid	73.8	74.64
KRH25861	Soybean	plastid	73.52	74.57
KRH55656	Soybean	plastid	72.39	74.49
Solyc07g064160.2.1	Tomato	plastid	74.08	74.29
AT5G54770.1	Thale cress	plastid	72.96	74.21
CDY28754	Canola	plastid	72.96	74.21
CDY52570	Canola	plastid	73.52	74.15
Bra029007.1-P	Field mustard	plastid	73.24	74.07
Bra022742.1-P	Field mustard	plastid	72.68	73.93
PGSC0003DMT400049574	Potato	plastid	74.08	73.67
CDY47441	Canola	plastid	72.96	73.58
VIT_10s0116g00530.t01	Wine grape	plastid	73.52	73.52
Bra002957.1-P	Field mustard	plastid	72.68	73.3
VIT_19s0177g00140.t01	Wine grape	plastid	71.55	71.95
CDY42479	Canola	plastid	51.27	70.54
TraesCS3B01G435500.1	Wheat	plastid	64.51	67.75
GSMUA_Achr2P14040_001	Banana	plastid	43.38	66.96
HORVU7Hr1G090100.3	Barley	cytosol	67.04	64.15
KRH65723	Soybean	cytosol	40.0	62.83
HORVU3Hr1G090190.1	Barley	plastid	61.41	61.24

Protein Annotations

Gene3D:3.50.50.60	EntrezGene:542715	MapMan:7.2.2.1	UniProt:B4G015	EMBL:BT042703	EMBL:BT069156
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009228	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0046872
GO:GO:0052837	InterPro:IPR036188	HAMAP:MF_03158	ProteinID:ONM40514.1	PFAM:PF01946	PANTHER:PTHR43422
PANTHER:PTHR43422:SF3	SUPFAM:SSF51905	InterPro:Sti35	TIGRFAMs:TIGR00292	InterPro:Thi4_fam	UniParc:UPI00017B785B
EnsemblPlantsGene:Zm00001d044228	EnsemblPlants:Zm00001d044228_P001	EnsemblPlants:Zm00001d044228_T001	SEG:seg	:	:

Description

thiamine biosynthesis2 thiamine biosynthesis2

Coordinates

chr3:-:222461984..222463637

Molecular Weight (calculated)

37310.0 Da

IEP (calculated)

5.680

GRAVY (calculated)

0.137

Length

355 amino acids

Sequence
(BLAST)

001: MATTAASSLL KSSFAGSRLP SATRTTTPSS VAVATPRAGG GPIRASISSS PTPPYDLTSF RFSPIKESIV SREMTRRYMT DMITHADTDV VIVGAGSAGL
101: SCAYELSKDP TVSVAIVEQS VSPGGGAWLG GQLFSAMVVR RPAHLFLDEL GVGYDEAEDY VVVKHAALFT STVMSRLLAR PNVKLFNAVA VEDLIVRRGR
201: VGGVVTNWAL VSMNHDTQSC MDPNVMEAKV VVSSCGHDGP FGATGVKRLQ DIGMISAVPG MKALDMNAAE DEIVRLTREV VPGMIVTGME VAEIDGAPRM
301: GPTFGAMMIS GQKAAHLALK ALGRPNAVDG TIPEVSPALR EEFVIASKDD EVVDA

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.