CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35585	Soybean	plastid	95.44	95.44
GSMUA_Achr7P00180_001	Banana	cytosol	22.79	85.11
VIT_10s0116g00530.t01	Wine grape	plastid	82.34	81.41
TraesCS7D01G373100.2	Wheat	plastid, unclear	79.2	79.2
TraesCS7B01G278200.1	Wheat	plastid	79.2	79.2
TraesCS7A01G376800.1	Wheat	plastid	79.2	79.2
Os07t0529600-01	Rice	plastid	80.06	79.15
EER99743	Sorghum	plastid	78.06	77.84
Zm00001d011183_P001	Maize	plastid	78.35	77.68
KRH55656	Soybean	plastid	76.07	77.39
EES03134	Sorghum	plastid	77.78	77.12
KRH25861	Soybean	plastid	76.35	76.57
Zm00001d044228_P001	Maize	plastid	77.21	76.34
KRH65723	Soybean	cytosol	46.72	72.57
GSMUA_Achr2P14040_001	Banana	plastid	43.59	66.52
TraesCS3B01G435500.1	Wheat	plastid	62.96	65.38
HORVU7Hr1G090100.3	Barley	cytosol	68.09	64.42
HORVU3Hr1G090190.1	Barley	plastid	62.39	61.52

Protein Annotations

EntrezGene:100794288	Gene3D:3.50.50.60	MapMan:7.2.2.1	EMBL:ACUP02012669	InterPro:FAD/NAD-bd_sf	EnsemblPlantsGene:GLYMA_20G142000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009228	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0046872
GO:GO:0052837	UniProt:I1NGA6	InterPro:IPR036188	EnsemblPlants:KRG91236	ProteinID:KRG91236	ProteinID:KRG91236.1
HAMAP:MF_03158	PFAM:PF01946	PRINTS:PR00419	PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	SUPFAM:SSF51905
InterPro:Sti35	TIGRFAMs:TIGR00292	InterPro:Thi4_fam	UniParc:UPI000233DD5B	:	:

Description

hypothetical protein

Coordinates

chr20:-:38051433..38053497

Molecular Weight (calculated)

37257.2 Da

IEP (calculated)

5.713

GRAVY (calculated)

0.105

Length

351 amino acids

Sequence
(BLAST)

001: MAAMATTTLS SNPKLSFFNG KPVTYSSRVA PTTKLSSSKQ GTISMSLTPP PYDLQSFKFQ PIKESIVSRE MTRRYMTDMI TYADTDVVIV GAGSAGLSCA
101: YELSKNPAVS VAIVEQSVSP GGGAWLGGQL FSAMVVRKPA HLFLDELGVA YDEQEDYVVI KHAALFTSTI MSRLLARPNV KLFNAVAAED LIVKEGRVAG
201: VVTNWALVSM NHDTQSCMDP NVMEAKVVVS SCGHDGPFGA TGVKRLKSIG MIDSVPGMKA LDMNAAEDAI VRLTREIVPG MIVTGMEVAE IDGSPRMGPT
301: FGAMMISGQK AAHLALKALG RNNAIDGTCG VGREEPQLIL ASADTEEIVD A

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.