Factsheet for VIT_10s0116g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41008	Canola	peroxisome	69.86	88.57
GSMUA_Achr7P00180_001	Banana	cytosol	22.54	85.11
KRG91236	Soybean	plastid	81.41	82.34
KRH35585	Soybean	plastid	80.85	81.77
CDY28754	Canola	plastid	78.87	80.23
Bra022742.1-P	Field mustard	plastid	78.59	79.94
VIT_19s0177g00140.t01	Wine grape	plastid	79.44	79.89
TraesCS7D01G373100.2	Wheat	plastid, unclear	78.87	79.77
TraesCS7B01G278200.1	Wheat	plastid	78.87	79.77
TraesCS7A01G376800.1	Wheat	plastid	78.87	79.77
CDY43024	Canola	plastid	78.59	79.49
CDY52570	Canola	plastid	78.59	79.26
Bra002957.1-P	Field mustard	plastid	78.31	78.98
Bra029007.1-P	Field mustard	plastid	78.03	78.92
CDY47441	Canola	plastid	78.03	78.69
AT5G54770.1	Thale cress	plastid	76.62	77.94
Os07t0529600-01	Rice	plastid	77.18	77.18
CDY42479	Canola	plastid	55.77	76.74
EER99743	Sorghum	plastid	74.37	75.0
EES03134	Sorghum	plastid	74.65	74.86
Zm00001d011183_P001	Maize	plastid	74.37	74.58
Zm00001d044228_P001	Maize	plastid	73.52	73.52
GSMUA_Achr2P14040_001	Banana	plastid	42.54	65.65
TraesCS3B01G435500.1	Wheat	plastid	61.97	65.09
HORVU7Hr1G090100.3	Barley	cytosol	67.89	64.96
HORVU3Hr1G090190.1	Barley	plastid	59.72	59.55

Protein Annotations

EntrezGene:100265774	wikigene:100265774	Gene3D:3.50.50.60	MapMan:7.2.2.1	EMBL:AM446866	ProteinID:CAN74175
ProteinID:CAN74175.1	ProteinID:CCB48166	ProteinID:CCB48166.1	UniProt:F6H7K5	InterPro:FAD/NAD-bd_sf	EMBL:FN595248
GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009228	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0046872	GO:GO:0052837
InterPro:IPR036188	HAMAP:MF_03158	PFAM:PF01946	PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	SUPFAM:SSF51905
InterPro:Sti35	TIGR:TC53549	EntrezGene:THI1-2	wikigene:THI1-2	TIGRFAMs:TIGR00292	InterPro:Thi4_fam
UniParc:UPI00015CCC4F	ArrayExpress:VIT_10s0116g00530	EnsemblPlantsGene:VIT_10s0116g00530	EnsemblPlants:VIT_10s0116g00530.t01	unigene:Vvi.560	RefSeq:XP_002267414
RefSeq:XP_002267414.1	SEG:seg	:	:	:	:

Description

THI1-2Thiamine thiazole synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F6H7K5]

Coordinates

chr10:+:240797..242174

Molecular Weight (calculated)

38107.1 Da

IEP (calculated)

5.207

GRAVY (calculated)

0.078

Length

355 amino acids

Sequence
(BLAST)

001: MASMATTLTS LSSNPKPAFF DNKSSFHGSP ISYRVLPIKV SHQSPTISMS SVSPYDLQSF KFEPIKESIV AREMTRRYMM DMITYADTDV VIVGAGSAGL
101: SCAYELSKNP SIRVAIIEQS VSPGGGAWLG GQLFSAMVVR KPAHHFLDEL GIEYDEQDNY VVIKHAALFT STIMSKLLAR PNVKLFNAVA AEDLIVKEER
201: VAGVVTNWAL VSMNHDTQSC MDPNVMEAKV VVSSCGHDGP FGATGVKRLK SIGMIDSVPG MKALDMNTAE DAIVRLTREI VPGMIVTGME VAEIDGAPRM
301: GPTFGAMMIS GQKAAHLALR ALGQPNAIDG NYTEAETMQP ELILAAAETG EIVDA

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.