Factsheet for Bra029007.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43024	Canola	plastid	98.29	98.29
CDY52570	Canola	plastid	97.72	97.44
Bra002957.1-P	Field mustard	plastid	95.16	94.89
Bra022742.1-P	Field mustard	plastid	93.73	94.27
AT5G54770.1	Thale cress	plastid	91.17	91.69
GSMUA_Achr7P00180_001	Banana	cytosol	22.22	82.98
VIT_10s0116g00530.t01	Wine grape	plastid	78.92	78.03
VIT_19s0177g00140.t01	Wine grape	plastid	77.78	77.34
Solyc07g064160.2.1	Tomato	plastid	76.92	76.27
Os07t0529600-01	Rice	plastid	76.35	75.49
EER99743	Sorghum	plastid	74.93	74.72
TraesCS7D01G373100.2	Wheat	plastid, unclear	74.64	74.64
PGSC0003DMT400049574	Potato	plastid	75.78	74.51
TraesCS7B01G278200.1	Wheat	plastid	74.36	74.36
TraesCS7A01G376800.1	Wheat	plastid	74.36	74.36
EES03134	Sorghum	plastid	74.93	74.29
Zm00001d011183_P001	Maize	plastid	74.64	74.01
Zm00001d044228_P001	Maize	plastid	74.07	73.24
GSMUA_Achr2P14040_001	Banana	plastid	43.87	66.96
KRH65723	Soybean	cytosol	40.74	63.27
TraesCS3B01G435500.1	Wheat	plastid	59.83	62.13
HORVU7Hr1G090100.3	Barley	cytosol	65.24	61.73
HORVU3Hr1G090190.1	Barley	plastid	60.4	59.55

Protein Annotations

Gene3D:3.50.50.60	MapMan:7.2.2.1	EnsemblPlantsGene:Bra029007	EnsemblPlants:Bra029007.1	EnsemblPlants:Bra029007.1-P	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009228
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0046872	GO:GO:0052837
InterPro:IPR036188	UniProt:M4EJP1	HAMAP:MF_03158	PFAM:PF01946	PANTHER:PTHR43422	PANTHER:PTHR43422:SF3
SUPFAM:SSF51905	InterPro:Sti35	TIGRFAMs:TIGR00292	InterPro:Thi4_fam	UniParc:UPI000253FEE8	SEG:seg

Description

AT5G54770 (E=5e-174) THI1, TZ, THI4 | THI1; protein homodimerization

Coordinates

chrA03:-:5835297..5838741

Molecular Weight (calculated)

36949.6 Da

IEP (calculated)

5.621

GRAVY (calculated)

0.169

Length

351 amino acids

Sequence
(BLAST)

001: MAAVTSTLSL SSSKPQRLFD SSFHGSSISA SPVSVGLKPR SASTVSVRAT AGYDLNAFTF APIKESIVSR EMTRRYMTDM ITYAETDVVV VGAGSAGLSC
101: AYEISKNPNV QVAIIEQSVS PGGGAWLGGQ LFSAMIVRKP AHLFLDEIGV PYDEQDNYVV IKHAALFTST IMSKLLARPN VKLFNAVAAE DLIVKGNRVG
201: GVVTNWALVS MNHDTQSCMD PNVMEAKIVV SSCGHDGPFG DTGVKRLKSI GLIDHVPGMK ALDMNTAEDA IVRLTREVVP GMIVTGMEVA EIDGAPRMGP
301: TFGAMMISGQ KAGHLALKAL GQPNALDGTY VGDLSPELVL AVADSAETVD A

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.