Factsheet for VIT_19s0177g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41008	Canola	peroxisome	69.41	87.5
Solyc07g064160.2.1	Tomato	plastid	80.17	79.94
VIT_10s0116g00530.t01	Wine grape	plastid	79.89	79.44
KRH25861	Soybean	plastid	78.75	79.43
KRH55656	Soybean	plastid	77.62	79.42
PGSC0003DMT400049574	Potato	plastid	80.17	79.27
GSMUA_Achr7P00180_001	Banana	cytosol	20.96	78.72
CDY28754	Canola	plastid	77.34	78.22
Bra002957.1-P	Field mustard	plastid	77.9	78.12
CDY47441	Canola	plastid	77.9	78.12
CDY43024	Canola	plastid	77.62	78.06
Bra022742.1-P	Field mustard	plastid	77.05	77.94
CDY52570	Canola	plastid	77.62	77.84
Bra029007.1-P	Field mustard	plastid	77.34	77.78
AT5G54770.1	Thale cress	plastid	76.49	77.36
TraesCS7D01G373100.2	Wheat	plastid, unclear	75.64	76.07
TraesCS7A01G376800.1	Wheat	plastid	75.64	76.07
TraesCS7B01G278200.1	Wheat	plastid	75.64	76.07
Os07t0529600-01	Rice	plastid	75.64	75.21
CDY42479	Canola	plastid	54.96	75.19
EER99743	Sorghum	plastid	73.09	73.3
Zm00001d011183_P001	Maize	plastid	73.09	72.88
EES03134	Sorghum	plastid	73.09	72.88
Zm00001d044228_P001	Maize	plastid	71.95	71.55
GSMUA_Achr2P14040_001	Banana	plastid	42.49	65.22
TraesCS3B01G435500.1	Wheat	plastid	60.62	63.31
HORVU7Hr1G090100.3	Barley	cytosol	65.44	62.26
HORVU3Hr1G090190.1	Barley	plastid	58.64	58.15

Protein Annotations

EntrezGene:100260728	wikigene:100260728	Gene3D:3.50.50.60	MapMan:7.2.2.1	ProteinID:CCB48802	ProteinID:CCB48802.1
UniProt:F6H9A9	InterPro:FAD/NAD-bd_sf	EMBL:FN595498	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009228	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0046872	GO:GO:0052837	InterPro:IPR036188	HAMAP:MF_03158	PFAM:PF01946
PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	SUPFAM:SSF51905	InterPro:Sti35	TIGR:TC56909	EntrezGene:THI1-1
wikigene:THI1-1	TIGRFAMs:TIGR00292	InterPro:Thi4_fam	UniParc:UPI00015C7D12	ArrayExpress:VIT_19s0177g00140	EnsemblPlantsGene:VIT_19s0177g00140
EnsemblPlants:VIT_19s0177g00140.t01	unigene:Vvi.7545	RefSeq:XP_002281769	RefSeq:XP_002281769.1	RefSeq:XP_003634708	RefSeq:XP_003634708.1
SEG:seg	:	:	:	:	:

Description

THI1-1Thiamine thiazole synthase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F6H9A9]

Coordinates

chr19:+:5983337..5985009

Molecular Weight (calculated)

37515.6 Da

IEP (calculated)

6.101

GRAVY (calculated)

0.138

Length

353 amino acids

Sequence
(BLAST)

001: MATLTSSICS KPKASVFDPH KSSFHGVPIA TQARLSPVKS TPVNLAVTAA AMPYDLRSFK FEPIKESIVS REMTRRYMMD MITYADTDVV VVGAGSAGLS
101: CAYELSKNPS VQVAIIEQSV SPGGGAWLGG QLFSSMVVRK PAHRFLDELG LEYDEQDNYV VIKHAALFTS TIMSKLLARP NVKLFNAVAA EDLIIKEGKV
201: GGVVTNWALV SMNHDTQSCM DPNVMEAKVV VSSCGHDGPF GATGVKRLRS VGMIDSVPGM KALDMNTAED EIVRLTREVV PGMIVTGMEV AEIDGSPRMG
301: PTFGAMMISG QKAAHLALKS LGLPNALDGT YIGNLHPELV LAAAADAAEI AEA

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.