CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55656	Soybean	plastid	92.0	93.33
VIT_19s0177g00140.t01	Wine grape	plastid	79.43	78.75
GSMUA_Achr7P00180_001	Banana	cytosol	21.14	78.72
Solyc07g064160.2.1	Tomato	plastid	78.57	77.68
PGSC0003DMT400049574	Potato	plastid	78.0	76.47
KRG91236	Soybean	plastid	76.57	76.35
KRH35585	Soybean	plastid	75.43	75.21
TraesCS7D01G373100.2	Wheat	plastid, unclear	74.86	74.64
TraesCS7B01G278200.1	Wheat	plastid	74.86	74.64
TraesCS7A01G376800.1	Wheat	plastid	74.86	74.64
Zm00001d011183_P001	Maize	plastid	75.14	74.29
Os07t0529600-01	Rice	plastid	74.86	73.8
EES03134	Sorghum	plastid	74.57	73.73
EER99743	Sorghum	plastid	74.0	73.58
Zm00001d044228_P001	Maize	plastid	74.57	73.52
TraesCS3B01G435500.1	Wheat	plastid	61.71	63.91
KRH65723	Soybean	cytosol	41.14	63.72
GSMUA_Achr2P14040_001	Banana	plastid	41.14	62.61
HORVU7Hr1G090100.3	Barley	cytosol	65.71	61.99
HORVU3Hr1G090190.1	Barley	plastid	60.86	59.83

Protein Annotations

Gene3D:3.50.50.60	MapMan:7.2.2.1	EMBL:ACUP02007363	InterPro:FAD/NAD-bd_sf	EnsemblPlantsGene:GLYMA_12G135000	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009228	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0046872	GO:GO:0052837	UniProt:I1LSM4
InterPro:IPR036188	EnsemblPlants:KRH25861	ProteinID:KRH25861	ProteinID:KRH25861.1	HAMAP:MF_03158	PFAM:PF01946
PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	SUPFAM:SSF51905	InterPro:Sti35	TIGRFAMs:TIGR00292	InterPro:Thi4_fam
UniParc:UPI00023D01E7	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:15678336..15681873

Molecular Weight (calculated)

37071.7 Da

IEP (calculated)

6.512

GRAVY (calculated)

0.089

Length

350 amino acids

Sequence
(BLAST)

001: MASSTITSSF LTSHPSSLFN KSSSSSFPSF HATPTLRPHR PRASMSAAAP PPPYDFGSFR FEPIRESIVS REMTRRYMTD MVTHADTDVV VVGAGSAGLS
101: CAYELSKNPS VNIAIVEQSV SPGGGAWLGG QLFSAMVVRK PAHLFLDELG LEYDEQDNYV VIKHAALFTS TIMSKLLARP NVKLFNAVAA EDLIVKNGRV
201: GGVVTNWALV SMNHDTQSCM DPNVMEAKVV VSSCGHDGPF GATGVKRLKS IGLIDSVPGM KALDMNKAED AIVKLTREVV PGMIVTGMEV AEIDGAPRMG
301: PTFGAMMISG QKAAHLALRS LGLPNALDSV GNVHPELVLA AAESAEIADA

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.