Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 2
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54770.1 | KRH10294 | AT3G46090.1 | 17259181 |
| AT5G54770.1 | KRH23029 | AT3G46090.1 | 17259181 |
| AT5G54770.1 | KRH24840 | AT3G46090.1 | 17259181 |
| AT5G54770.1 | KRH29844 | AT3G46090.1 | 17259181 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41008 | Canola | peroxisome | 63.27 | 51.07 |
| GSMUA_Achr7P00180_001 | Banana | cytosol | 21.24 | 51.06 |
| KRH35585 | Soybean | plastid | 73.01 | 47.01 |
| KRG91236 | Soybean | plastid | 72.57 | 46.72 |
| KRH55656 | Soybean | plastid | 64.16 | 42.03 |
| Os07t0529600-01 | Rice | plastid | 65.49 | 41.69 |
| EER99743 | Sorghum | plastid | 64.6 | 41.48 |
| TraesCS7D01G373100.2 | Wheat | plastid, unclear | 64.16 | 41.31 |
| TraesCS7B01G278200.1 | Wheat | plastid | 64.16 | 41.31 |
| TraesCS7A01G376800.1 | Wheat | plastid | 64.16 | 41.31 |
| CDY28754 | Canola | plastid | 63.72 | 41.26 |
| Bra022742.1-P | Field mustard | plastid | 63.72 | 41.26 |
| KRH25861 | Soybean | plastid | 63.72 | 41.14 |
| CDY43024 | Canola | plastid | 63.72 | 41.03 |
| AT5G54770.1 | Thale cress | plastid | 63.27 | 40.97 |
| Zm00001d011183_P001 | Maize | plastid | 64.16 | 40.96 |
| CDY52570 | Canola | plastid | 63.72 | 40.91 |
| Bra029007.1-P | Field mustard | plastid | 63.27 | 40.74 |
| EES03134 | Sorghum | plastid | 63.72 | 40.68 |
| Bra002957.1-P | Field mustard | plastid | 62.83 | 40.34 |
| CDY47441 | Canola | plastid | 62.83 | 40.34 |
| Zm00001d044228_P001 | Maize | plastid | 62.83 | 40.0 |
| HORVU7Hr1G090100.3 | Barley | cytosol | 64.16 | 39.08 |
| CDY42479 | Canola | plastid | 42.48 | 37.21 |
| TraesCS3B01G435500.1 | Wheat | plastid | 55.31 | 36.98 |
| HORVU3Hr1G090190.1 | Barley | plastid | 50.44 | 32.02 |
| GSMUA_Achr2P14040_001 | Banana | plastid | 23.89 | 23.48 |
Protein Annotations
| Gene3D:3.50.50.60 | MapMan:7.2.2.1 | EMBL:ACUP02001476 | InterPro:FAD/NAD-bd_sf | EnsemblPlantsGene:GLYMA_03G057200 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005829 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009228 | GO:GO:0009409 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0010319 | GO:GO:0018131 | GO:GO:0019904 | GO:GO:0042803 | GO:GO:0052837 | InterPro:IPR036188 |
| UniProt:K7KD42 | EnsemblPlants:KRH65723 | ProteinID:KRH65723 | ProteinID:KRH65723.1 | PFAM:PF01946 | PANTHER:PTHR43422 |
| PANTHER:PTHR43422:SF3 | SUPFAM:SSF51905 | UniParc:UPI00023BCA23 | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:8043283..8044143
Molecular Weight (calculated)
24706.6 Da
IEP (calculated)
5.948
GRAVY (calculated)
0.185
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVCKPAHLF LDELDVAYDE QEDYIVIKHT ALFTSTIMSK ILARPNVKRF NAVVAKDLIM KEGRVVTNLA LVSMNHDTQS CMDPNVMEAK VVVSSCGHDG
101: PLSATGVKRL KSIGMIDNVP GMKALDTKSI GMVVVRLTRE IVLGMIVTGM EVAEIGGSPR MGPYLSMMFK LTFKLMERVE LKALGRNNAI DGTCGVGTEE
201: PHLIFASTVE FHDGLESMML DQVASE
101: PLSATGVKRL KSIGMIDNVP GMKALDTKSI GMVVVRLTRE IVLGMIVTGM EVAEIGGSPR MGPYLSMMFK LTFKLMERVE LKALGRNNAI DGTCGVGTEE
201: PHLIFASTVE FHDGLESMML DQVASE
001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA
Arabidopsis Description
THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.