CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P00180_001	Banana	cytosol	27.86	82.98
CDY28754	Canola	plastid	99.64	79.94
CDY47441	Canola	plastid	98.93	78.69
CDY52570	Canola	plastid	98.57	78.41
CDY43024	Canola	plastid	98.21	78.35
AT5G54770.1	Thale cress	plastid	94.64	75.93
CDY42479	Canola	plastid	65.71	71.32
VIT_10s0116g00530.t01	Wine grape	plastid	88.57	69.86
VIT_19s0177g00140.t01	Wine grape	plastid	87.5	69.41
Solyc07g064160.2.1	Tomato	plastid	87.5	69.21
TraesCS7D01G373100.2	Wheat	plastid, unclear	85.0	67.81
PGSC0003DMT400049574	Potato	plastid	86.43	67.79
EER99743	Sorghum	plastid	85.0	67.61
Os07t0529600-01	Rice	plastid	85.71	67.61
TraesCS7B01G278200.1	Wheat	plastid	84.64	67.52
TraesCS7A01G376800.1	Wheat	plastid	84.64	67.52
Zm00001d011183_P001	Maize	plastid	84.64	66.95
EES03134	Sorghum	plastid	84.64	66.95
Zm00001d044228_P001	Maize	plastid	83.21	65.63
KRH65723	Soybean	cytosol	51.07	63.27
HORVU7Hr1G090100.3	Barley	cytosol	82.86	62.53
TraesCS3B01G435500.1	Wheat	plastid	68.93	57.1
GSMUA_Achr2P14040_001	Banana	plastid	45.0	54.78
HORVU3Hr1G090190.1	Barley	plastid	69.29	54.49

Protein Annotations

EnsemblPlants:CDY41008	EnsemblPlantsGene:GSBRNA2T00072297001	Gene3D:3.50.50.60	GO:A0A078HW44	InterPro:FAD/NAD-bd_sf	InterPro:IPR036188
InterPro:Thi4_fam	PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	PFAM:PF01946	PFscan:PS51257	ProteinID:CDY41008
ProteinID:CDY41008.1	SEG:seg	SUPFAM:SSF51905	TIGRFAMs:TIGR00292	UniParc:UPI0004EEB00A	UniProt:A0A078HW44
MapMan:7.2.2.1	:	:	:	:	:

Description

BnaA02g27980DBnaA02g27980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW44]

Coordinates

chrLK032487:+:287372..289947

Molecular Weight (calculated)

29530.9 Da

IEP (calculated)

4.932

GRAVY (calculated)

0.221

Length

280 amino acids

Sequence
(BLAST)

001: MTRRYMTDMI TYAETDVVVV GAGSAGLSCA YEISKNPNVQ VAIIEQSVSP GGGAWLGGQL FSAMIVRKPA HLFLDEIGVP YDEQDNYVVI KHAALFTSTI
101: MSKLLARPNV KLFNAVAAED LIVKGNRVGG VVTNWALVSM NHDTQSCMDP NVMEAKIVVS SCGHDGPFGA TGVKRLKSIG LIDHVPGMKA LDMNTAEDAI
201: VRLTREVVPG MIVTGMEVAE IDGAPRMGPT FGAMMISGQK AAHLALKALG QPNVIDGSYV GDLSPELVLA AADSAETVDA

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.