CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011183_P001	Maize	plastid	90.34	89.83
EES03134	Sorghum	plastid	89.49	88.98
CDY41008	Canola	peroxisome	67.61	85.0
GSMUA_Achr7P00180_001	Banana	cytosol	22.44	84.04
Os07t0529600-01	Rice	plastid	84.38	83.66
TraesCS7D01G373100.2	Wheat	plastid, unclear	82.67	82.91
TraesCS7B01G278200.1	Wheat	plastid	82.67	82.91
TraesCS7A01G376800.1	Wheat	plastid	82.67	82.91
KRG91236	Soybean	plastid	77.84	78.06
KRH35585	Soybean	plastid	77.56	77.78
Bra029007.1-P	Field mustard	plastid	74.72	74.93
CDY28754	Canola	plastid	74.15	74.79
CDY43024	Canola	plastid	74.43	74.64
Bra022742.1-P	Field mustard	plastid	73.86	74.5
CDY52570	Canola	plastid	74.43	74.43
Bra002957.1-P	Field mustard	plastid	74.43	74.43
VIT_10s0116g00530.t01	Wine grape	plastid	75.0	74.37
Solyc07g064160.2.1	Tomato	plastid	74.72	74.29
AT5G54770.1	Thale cress	plastid	73.58	74.21
KRH55656	Soybean	plastid	72.73	74.2
CDY47441	Canola	plastid	74.15	74.15
KRH25861	Soybean	plastid	73.58	74.0
PGSC0003DMT400049574	Potato	plastid	75.0	73.95
VIT_19s0177g00140.t01	Wine grape	plastid	73.3	73.09
CDY42479	Canola	plastid	52.56	71.71
TraesCS3B01G435500.1	Wheat	plastid	67.33	70.12
GSMUA_Achr2P14040_001	Banana	plastid	43.47	66.52
HORVU7Hr1G090100.3	Barley	cytosol	69.6	66.04
KRH65723	Soybean	cytosol	41.48	64.6
HORVU3Hr1G090190.1	Barley	plastid	63.92	63.2

Protein Annotations

Gene3D:3.50.50.60	MapMan:7.2.2.1	EntrezGene:8063504	EnsemblPlants:EER99743	ProteinID:EER99743	ProteinID:EER99743.1
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009228	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016491	GO:GO:0046872	GO:GO:0052837	InterPro:IPR036188	HAMAP:MF_03158	PFAM:PF01946
PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	EnsemblPlantsGene:SORBI_3002G384400	SUPFAM:SSF51905	unigene:Sbi.14124	InterPro:Sti35
TIGRFAMs:TIGR00292	InterPro:Thi4_fam	UniParc:UPI0001A83F90	RefSeq:XP_002463222.1	SEG:seg	:

Description

THI1-2hypothetical protein

Coordinates

chr2:-:73966177..73967637

Molecular Weight (calculated)

36996.7 Da

IEP (calculated)

5.712

GRAVY (calculated)

0.165

Length

352 amino acids

Sequence
(BLAST)

001: MATTASSLLK SSFAGARLPA STRTPSSPAV VATPRGAGAI RASSISSSNP PYDLTSFRFS PIKESVVSRE MTRRYMTDMI TYADTDVVIV GAGSAGLSCA
101: YELSKDPSVS IAIVEQSVSP GGGAWLGGQL FSAMVVRKPA HLFLDELGVA YDEAEDYVVI KHAALFTSTV MSRLLARPNV KLFNAVAVED LIVKGGRVGG
201: VVTNWALVSM NHDTQSCMDP NVMEAKVVVS SCGHDGPFGA TGVKRLQDIG MISDVPGMKA LDMNTAEDEI VRLTREVVPG MIVTGMEVAE IDGAPRMGPT
301: FGAMMISGQK AAHLALKALG RPNAVDGTIK VVSPALRQEF VIASKDDEVV DA

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.