Factsheet for TraesCS7D01G373100.2

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, unclear
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G376800.1	Wheat	plastid	99.72	99.72
TraesCS7B01G278200.1	Wheat	plastid	99.43	99.43
Os07t0529600-01	Rice	plastid	88.89	87.89
CDY41008	Canola	peroxisome	67.81	85.0
GSMUA_Achr7P00180_001	Banana	cytosol	22.51	84.04
EER99743	Sorghum	plastid	82.91	82.67
Zm00001d011183_P001	Maize	plastid	82.34	81.64
EES03134	Sorghum	plastid	81.2	80.51
KRG91236	Soybean	plastid	79.2	79.2
KRH35585	Soybean	plastid	78.92	78.92
VIT_10s0116g00530.t01	Wine grape	plastid	79.77	78.87
Zm00001d044228_P001	Maize	plastid	79.49	78.59
KRH55656	Soybean	plastid	74.64	75.94
CDY28754	Canola	plastid	75.5	75.93
Bra022742.1-P	Field mustard	plastid	75.21	75.64
AT5G54770.1	Thale cress	plastid	75.21	75.64
VIT_19s0177g00140.t01	Wine grape	plastid	76.07	75.64
Bra002957.1-P	Field mustard	plastid	75.5	75.28
CDY47441	Canola	plastid	75.5	75.28
CDY52570	Canola	plastid	75.21	75.0
CDY43024	Canola	plastid	74.93	74.93
KRH25861	Soybean	plastid	74.64	74.86
Bra029007.1-P	Field mustard	plastid	74.64	74.64
Solyc07g064160.2.1	Tomato	plastid	75.21	74.58
PGSC0003DMT400049574	Potato	plastid	74.64	73.39
HORVU7Hr1G090100.3	Barley	cytosol	77.49	73.32
CDY42479	Canola	plastid	53.28	72.48
GSMUA_Achr2P14040_001	Banana	plastid	43.59	66.52
KRH65723	Soybean	cytosol	41.31	64.16

Protein Annotations

Gene3D:3.50.50.60	MapMan:7.2.2.1	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950
GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009228
GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628
GO:GO:0009941	GO:GO:0009987	GO:GO:0010319	GO:GO:0018131	GO:GO:0019904	GO:GO:0042803
InterPro:IPR036188	HAMAP:MF_03158	PFAM:PF01946	PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	SUPFAM:SSF51905
InterPro:Sti35	TIGRFAMs:TIGR00292	InterPro:Thi4_fam	EnsemblPlantsGene:TraesCS7D01G373100	EnsemblPlants:TraesCS7D01G373100.2	:

Description

No Description!

Coordinates

chr7D:+:483877570..483878752

Molecular Weight (calculated)

37132.1 Da

IEP (calculated)

5.659

GRAVY (calculated)

0.178

Length

351 amino acids

Sequence
(BLAST)

001: MAAMATTASS LLKTSFSGVR LPAAARTPSC VATPRAGAIC NSISSSTPPY DLNAFKFSPI KESIVSREMT RRYMTDMITY ADTDVVIVGA GSAGLSCAYE
101: LSKDPSISIA IIEQSVSPGG GAWLGGQLFS AMVVRKPAHL FLDELNIEYD EQEDYVVIKH AALFTSTVMS RLLARPNVKL FNAVAVEDLI VKENRVAGVV
201: TNWALVSMNH DTQSCMDPNV MEAKVVVSSC GHDGPFGATG VKRLQDIGMI QAVPGMKALD MNTAEDAIVR LTREVVPGMI VTGMEVAEID GAPRMGPTFG
301: AMMISGQKAA HLALKALGRP NGIDGTLKNV TPALHPEMIL AATNNGDIVD A

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.