CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91236	Soybean	plastid	95.44	95.44
GSMUA_Achr7P00180_001	Banana	cytosol	22.51	84.04
VIT_10s0116g00530.t01	Wine grape	plastid	81.77	80.85
TraesCS7D01G373100.2	Wheat	plastid, unclear	78.92	78.92
TraesCS7B01G278200.1	Wheat	plastid	78.92	78.92
TraesCS7A01G376800.1	Wheat	plastid	78.92	78.92
Os07t0529600-01	Rice	plastid	79.77	78.87
EER99743	Sorghum	plastid	77.78	77.56
Zm00001d011183_P001	Maize	plastid	78.06	77.4
EES03134	Sorghum	plastid	77.21	76.55
KRH55656	Soybean	plastid	75.21	76.52
Zm00001d044228_P001	Maize	plastid	76.92	76.06
KRH25861	Soybean	plastid	75.21	75.43
KRH65723	Soybean	cytosol	47.01	73.01
GSMUA_Achr2P14040_001	Banana	plastid	43.3	66.09
TraesCS3B01G435500.1	Wheat	plastid	62.96	65.38
HORVU7Hr1G090100.3	Barley	cytosol	67.81	64.15
HORVU3Hr1G090190.1	Barley	plastid	60.97	60.11

Protein Annotations

EntrezGene:100788953	Gene3D:3.50.50.60	MapMan:7.2.2.1	EMBL:ACUP02006692	InterPro:FAD/NAD-bd_sf	EnsemblPlantsGene:GLYMA_10G251500
GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009228	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0046872
GO:GO:0052837	UniProt:I1LE84	InterPro:IPR036188	EnsemblPlants:KRH35585	ProteinID:KRH35585	ProteinID:KRH35585.1
HAMAP:MF_03158	PFAM:PF01946	PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	SUPFAM:SSF51905	InterPro:Sti35
TIGRFAMs:TIGR00292	InterPro:Thi4_fam	UniParc:UPI00001A4D28	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:47969725..47971337

Molecular Weight (calculated)

37419.4 Da

IEP (calculated)

5.974

GRAVY (calculated)

0.111

Length

351 amino acids

Sequence
(BLAST)

001: MAAMATTTLS SNPKLSFFHG KPVTYSSRVA PTTKLFSSKQ GTISMSLTQP PYDLQSFKFQ PIKESIVSRE MTRRYMTDMI TYADTDVVIV GAGSAGLSCA
101: YEISKNPAVS VAIIEQSVSP GGGAWLGGQL FSAMVVRKPA HLFLDELGVA YDEQEDYVVI KHAALFTSTI MSRLLARPNV KLFNAVAAED LIVKEGRVAG
201: VVTNWALVSM NHDTQSCMDP NVMEAKVVVS SCGHDGPFGA TGVKRLKSIG MIDSVPGMKA LDMNAAEDAI VRLTREIVPG MIVTGMEVAE IDGSPRMGPT
301: FGAMMISGQK AAHLALKALG RNNAIDGTCG VGREEPQLIF ASADTEEIVD A

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.